CX290198
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.811e-22 Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 3 Query: 9 TRVINNNPLVDNVQIIHQ--PQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 T + NN + ++ Q QM EFPERP QPECSY+++TGDCK+K NCKYHHPKNR+PK PP L+DKGLPLRP Sbjct: 316 TTYLMNNSSAETSMLLSQYRHQMPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRP 393
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.695e-20 Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 3 Query: 24 NNPLVDNVQII-HQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPVSS 245 NN L + +Q QM V EFPERP QPEC+Y+L+TGDCK+K CKYHHPKNR+PK + +DKGLPLRP S Sbjct: 310 NNSLAETSSFSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQS 384
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H13_ARATH (Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis thaliana GN=At1g48195 PE=4 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.435e-19 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 3 Query: 81 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 +FPERPG+PECSY+LRTG+C K NCKYHHPKN P P CTL+DKGLPLRP Sbjct: 5 KFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRP 56
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.643e-16 Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 3 Query: 84 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 FPERPG+PEC Y+L+TGDCK+ ++CK+HHP++R+P C LS GLPLRP Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRP 336
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15 Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 3 Query: 84 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 FPERP QPEC ++++TGDCK+ + CK+HHPK RI +P C LS GLPLRP Sbjct: 306 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRP 356 HSP 2 Score: 67.3958 bits (163), Expect = 9.322e-11 Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 3 Query: 78 GEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 GE+P+R GQPEC Y+L+TG CK+ + CK+HHP+ + + L+ G PLRP Sbjct: 96 GEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRP 148
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3 Query: 84 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 FPERPGQPEC ++++TGDCK+ + CK+HHP++R P C LS GLPLRP Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRP 290
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 3 Query: 81 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 EFP+RP QPEC YF+RTGDCK+ S+C+YHHP + +P LS GLPLRP Sbjct: 303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRP 354
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H33_ARATH (Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3 Query: 84 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 FPERPGQPEC ++++TGDCK+ + CK+HHP++R P C LS GLPLRP Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRP 321 HSP 2 Score: 67.3958 bits (163), Expect = 9.322e-11 Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 3 Query: 3 FGTRVINNNPLVDNVQIIHQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLR 233 FG+ N+P D +I +M GE+PER GQPEC Y+L+TG CK+ CK+HHP+N+ + +L+ G PLR Sbjct: 57 FGSTCRFNHPR-DRELVIATARMR-GEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLR 131
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14 Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 3 Query: 84 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 FPERP QPEC ++++TGDCK+ + CK+HHPK R+ +P C L+ GLPLRP Sbjct: 315 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRP 365
BLAST of CX290198 vs. ExPASy Swiss-Prot
Match: C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14 Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 84 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPVSSDFQLC-FWMIYLLENDNLNC 302 FPERP QPEC Y+++TGDCK+ + CK+HHP+ R +P C LS GLPLRP +LC F+ Y + NC Sbjct: 329 FPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGE---ELCKFYSRYGICKFGANC 399 HSP 2 Score: 68.9366 bits (167), Expect = 3.204e-11 Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 3 Query: 3 FGTRVINNNPLVDNVQIIHQPQMLVGEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 236 FG N+P N+ I + GE+PER GQPEC Y+L+TG CK+ CK+HHP+ + + L+ G PLRP Sbjct: 97 FGMSCRFNHPQDRNLAIASA--RMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRP 172 The following BLAST results are available for this feature:
BLAST of CX290198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290198 ID=CX290198; Name=CX290198; organism=Citrus clementina; type=EST; length=743bpback to top |