CX290210

Overview
NameCX290210
Unique NameCX290210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12209 contig Ccv1_Contig12209:528..1248. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290210 vs. ExPASy Swiss-Prot
Match: NRL4A_TOBAC (Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.145e-57
Identity = 108/135 (80.00%), Postives = 115/135 (85.19%), Query Frame = 2
Query:    2 ADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAXXXXXXXXXXXXLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGSHK 406
            ADSR+VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY FSGTE+DLTPDSIVCA            LAGPNY GEALISADLDLGEIARAKFDFDVVGHY+RPEVLSL+VRDH  +PV+FTS S+K E S K
Sbjct:  215 ADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGTEEDLTPDSIVCAGGSVIISPSGAVLAGPNYVGEALISADLDLGEIARAKFDFDVVGHYARPEVLSLIVRDHAVSPVSFTSTSSKAESSPK 349          
BLAST of CX290210 vs. ExPASy Swiss-Prot
Match: NRL4B_TOBAC (Bifunctional nitrilase/nitrile hydratase NIT4B OS=Nicotiana tabacum GN=NIT4B PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.372e-56
Identity = 108/135 (80.00%), Postives = 115/135 (85.19%), Query Frame = 2
Query:    2 ADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAXXXXXXXXXXXXLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGSHK 406
            ADSR+VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY FSGTE DLTPDSIVCA            LAGPNY+GEALISADLDLGEIARAKFDFDVVGHY+RPEVLSL+VRDH  +PV+FTS S+K E S K
Sbjct:  215 ADSRDVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGTE-DLTPDSIVCAGGSVIISPSGAVLAGPNYEGEALISADLDLGEIARAKFDFDVVGHYARPEVLSLIVRDHAVSPVSFTSTSSKAESSPK 348          
BLAST of CX290210 vs. ExPASy Swiss-Prot
Match: NRL4_ORYSJ (Bifunctional nitrilase/nitrile hydratase NIT4 OS=Oryza sativa subsp. japonica GN=NIT4 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.118e-51
Identity = 96/130 (73.85%), Postives = 107/130 (82.31%), Query Frame = 2
Query:    2 ADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAXXXXXXXXXXXXLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKT 391
            ADSR+VWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY FSG  ++ +PD++VC             LAGPNY+GEALI+ADLDLGEI RAKFDFDVVGHY+RPEVLSLVV D P  PV+FTSA+ KT
Sbjct:  221 ADSRQVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGLGEEPSPDTVVCPGGSVIISPSGEVLAGPNYEGEALITADLDLGEIVRAKFDFDVVGHYARPEVLSLVVNDQPHLPVSFTSAAEKT 350          
BLAST of CX290210 vs. ExPASy Swiss-Prot
Match: NRL4_ARATH (Bifunctional nitrilase/nitrile hydratase NIT4 OS=Arabidopsis thaliana GN=NIT4 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.067e-48
Identity = 93/133 (69.92%), Postives = 104/133 (78.20%), Query Frame = 2
Query:    2 ADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAXXXXXXXXXXXXLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTEGS 400
            ADSRE W ASMTHIALEGGCFVLSANQFCRRKDYP PPEY FSG+E+ LTPDS+VCA            LAGPNY GEALI+ADLDLG+IARAKFDFDVVGHYSRPEV SL +R+HP   V+F ++    + S
Sbjct:  222 ADSRETWLASMTHIALEGGCFVLSANQFCRRKDYPSPPEYMFSGSEESLTPDSVVCAGGSSIISPLGIVLAGPNYRGEALITADLDLGDIARAKFDFDVVGHYSRPEVFSLNIREHPRKAVSFKTSKVMEDES 354          
BLAST of CX290210 vs. ExPASy Swiss-Prot
Match: NRL2_ARATH (Nitrilase 2 OS=Arabidopsis thaliana GN=NIT2 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.767e-35
Identity = 74/131 (56.49%), Postives = 87/131 (66.41%), Query Frame = 2
Query:    2 ADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAXXXXXXXXXXXXLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTE 394
            AD  + WQ+SM HIA+EGGCFVLSA QFC RKD+P  P+Y F+    D  PDSIV              LAGPN++ E LI+ADLDLG++ARAK  FD VGHYSRP+VL L V +HP  PVTF S   K E
Sbjct:  204 ADGSKEWQSSMLHIAIEGGCFVLSACQFCLRKDFPDHPDYLFTDWYDDKEPDSIVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDVARAKLYFDSVGHYSRPDVLHLTVNEHPKKPVTFISKVEKAE 334          
BLAST of CX290210 vs. ExPASy Swiss-Prot
Match: NRL1_ARATH (Nitrilase 1 OS=Arabidopsis thaliana GN=NIT1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.400e-32
Identity = 69/131 (52.67%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    2 ADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAXXXXXXXXXXXXLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTE 394
            AD  + WQ+SM HIA+EGGCFVLSA QFC+RK +P  P+Y F+    D   DSIV              LAGPN++ E L++AD+DLG+IARAK  FD VGHYSRP+VL L V +HP   VTF +   K E
Sbjct:  211 ADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDYLFTDWYDDKEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDLGDIARAKLYFDSVGHYSRPDVLHLTVNEHPRKSVTFVTKVEKAE 341          
BLAST of CX290210 vs. ExPASy Swiss-Prot
Match: NRL3_ARATH (Nitrilase 3 OS=Arabidopsis thaliana GN=NIT3 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.829e-32
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    2 ADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAXXXXXXXXXXXXLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFTSASAKTE 394
            AD    WQASM HIA+EGGCFVLSA+QFC+R+++P  P+Y F+        D  V              LAGPNY+ E L++ADLDLG+IARAK  FDVVGHYS+P++ +L V +HP  PVTF +   K E
Sbjct:  211 ADYSLEWQASMIHIAVEGGCFVLSAHQFCKRREFPEHPDYLFNDIVDTKEHDPTVSGGGSVIISPLGKVLAGPNYESEGLVTADLDLGDIARAKLYFDVVGHYSKPDIFNLTVNEHPKKPVTFMTKVEKAE 341          
The following BLAST results are available for this feature:
BLAST of CX290210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NRL4A_TOBAC2.145e-5780.00Bifunctional nitrilase/nitrile hydratase NIT4A OS=... [more]
NRL4B_TOBAC2.372e-5680.00Bifunctional nitrilase/nitrile hydratase NIT4B OS=... [more]
NRL4_ORYSJ5.118e-5173.85Bifunctional nitrilase/nitrile hydratase NIT4 OS=O... [more]
NRL4_ARATH1.067e-4869.92Bifunctional nitrilase/nitrile hydratase NIT4 OS=A... [more]
NRL2_ARATH1.767e-3556.49Nitrilase 2 OS=Arabidopsis thaliana GN=NIT2 PE=1 S... [more]
NRL1_ARATH1.400e-3252.67Nitrilase 1 OS=Arabidopsis thaliana GN=NIT1 PE=1 S... [more]
NRL3_ARATH1.829e-3251.15Nitrilase 3 OS=Arabidopsis thaliana GN=NIT3 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC02021F12SK IF1 Citrus clementina cDNA clone C02021F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290210 ID=CX290210; Name=CX290210; organism=Citrus clementina; type=EST; length=721bp
GGCTGATTCCAGGGAAGTTTGGCAAGCGTCAATGACCCATATTGCCCTTG
AGGGTGGATGTTTTGTTTTGTCAGCCAACCAATTCTGTCGAAGGAAAGAT
TACCCACCTCCTCCGGAATATGAATTTTCTGGCACAGAACAGGACCTTAC
ACCAGATTCCATTGTCTGTGCTGGAGGCAGTGTTATCATATCACCATCTG
GGTCTGTTCTGGCCGGACCAAATTATGATGGAGAGGCTCTTATCTCAGCA
GATCTAGATCTTGGAGAAATAGCTCGGGCAAAGTTTGATTTTGATGTGGT
GGGCCATTATTCAAGACCTGAGGTCCTTAGCTTGGTTGTGAGGGATCATC
CTGCAACCCCAGTTACTTTCACCTCAGCATCTGCAAAAACAGAAGGTTCT
CACAAGTAGTTAATTCCAGCTAGTGCTGAGTTATCATGCAAATTCTTTGG
CCCTCTAATAATCAGGCAGACCCTTGTTACGATGACCATCTACATTGACA
AGGTCAGCTGTGTAATTACTGTTTTATCGACTTCATACTGACTTCTCTGC
ATAATTTCTCCTTTATCATGCCCTTACTGACAATTCTCTCAACGCCTGAN
ACTTCAGTATCTTTTTTCTTCTTTAGCAAATGTAAATTGGTGTTGACGGT
TGGCTGNCAATTGTTGCTATCTTGCTTTGCTGTAATTTCTGTGGTTAATG
TATAAATTAAAAATCCTATTT
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