CX290213

Overview
NameCX290213
Unique NameCX290213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig261 contig Ccv1_Contig261:3..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_ARATH (Protein arginine N-methyltransferase 5 OS=Arabidopsis thaliana GN=PMRT5 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.197e-60
Identity = 99/125 (79.20%), Postives = 114/125 (91.20%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            + VFTFTHPNFSTK +NQRYKKL+F +PSD GS++VHGFAGYFD++LYKDVHLGIEP+TATPNMFSWF IFFPLR PV + P +PLEVHFWRCCGS+KVWYEW V+SP PSP+HN+NGRSYWVGL
Sbjct:  518 QSVFTFTHPNFSTKVNNQRYKKLQFSLPSDAGSALVHGFAGYFDSVLYKDVHLGIEPTTATPNMFSWFPIFFPLRKPVEVHPDTPLEVHFWRCCGSSKVWYEWSVSSPTPSPMHNTNGRSYWVGL 642          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_ORYSJ (Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. japonica GN=PRMT5 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 8.640e-57
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            + VFTF HPN S   SNQRY KL+FEIP +TGS +VHGFAGYFDA+LYKDVHLGIEP+TATPNMFSWF IFFPLR P+ +   +P+EVHFWRCCG+TKVWYEW V +P+PSP+HNSNGRSYWVGL
Sbjct:  525 QSVFTFDHPNPSPNASNQRYTKLKFEIPQETGSCLVHGFAGYFDAVLYKDVHLGIEPNTATPNMFSWFPIFFPLRKPIYVPSKTPIEVHFWRCCGATKVWYEWAVTAPSPSPIHNSNGRSYWVGL 649          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_ORYSI (Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. indica GN=PRMT5 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 8.640e-57
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            + VFTF HPN S   SNQRY KL+FEIP +TGS +VHGFAGYFDA+LYKDVHLGIEP+TATPNMFSWF IFFPLR P+ +   +P+EVHFWRCCG+TKVWYEW V +P+PSP+HNSNGRSYWVGL
Sbjct:  525 QSVFTFDHPNPSPNASNQRYTKLKFEIPQETGSCLVHGFAGYFDAVLYKDVHLGIEPNTATPNMFSWFPIFFPLRKPIYVPSKTPIEVHFWRCCGATKVWYEWAVTAPSPSPIHNSNGRSYWVGL 649          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_PONAB (Protein arginine N-methyltransferase 5 OS=Pongo abelii GN=PRMT5 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            +P FTF+HPN      N RY  L F +  +T   ++HGFAGYF+ +LY+D+ L I P T +P MFSWF I FP++ P+ +R G  + V FWRC  S KVWYEW V +P  S +HN  GRSY +GL
Sbjct:  516 QPCFTFSHPNRDPMIDNNRYCTLEFPVEVNT---VLHGFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSKKVWYEWAVTAPVCSAIHNPTGRSYTIGL 637          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_MOUSE (Protein arginine N-methyltransferase 5 OS=Mus musculus GN=Prmt5 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            +P FTF+HPN      N RY  L F +  +T   ++HGFAGYF+ +LY+D+ L I P T +P MFSWF IFFP++ P+ +  G  + V FWRC  S KVWYEW V +P  S +HN  GRSY +GL
Sbjct:  516 KPCFTFSHPNRDPMIDNNRYCTLEFPVEVNT---VLHGFAGYFETVLYRDITLSIRPETHSPGMFSWFPIFFPIKQPITVHEGQNICVRFWRCSNSKKVWYEWAVTAPVCSSIHNPTGRSYTIGL 637          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_MACFA (Protein arginine N-methyltransferase 5 OS=Macaca fascicularis GN=PRMT5 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            +P FTF+HPN      N RY  L F +  +T   ++HGFAGYF+ +LY+D+ L I P T +P MFSWF I FP++ P+ +R G  + V FWRC  S KVWYEW V +P  S +HN  GRSY +GL
Sbjct:  516 QPCFTFSHPNRDPMIDNNRYCTLEFPVEVNT---VLHGFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSKKVWYEWAVTAPVCSAIHNPTGRSYTIGL 637          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_HUMAN (Protein arginine N-methyltransferase 5 OS=Homo sapiens GN=PRMT5 PE=1 SV=4)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            +P FTF+HPN      N RY  L F +  +T   ++HGFAGYF+ +LY+D+ L I P T +P MFSWF I FP++ P+ +R G  + V FWRC  S KVWYEW V +P  S +HN  GRSY +GL
Sbjct:  516 QPCFTFSHPNRDPMIDNNRYCTLEFPVEVNT---VLHGFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSKKVWYEWAVTAPVCSAIHNPTGRSYTIGL 637          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_BOVIN (Protein arginine N-methyltransferase 5 OS=Bos taurus GN=PRMT5 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            +P FTF+HPN      N RY  L F +  +T   ++HGFAGYF+ +LY+D+ L I P T +P MFSWF I FP++ P+ +R G  + V FWRC  S KVWYEW V +P  S +HN  GRSY +GL
Sbjct:  516 QPCFTFSHPNRDPMIDNNRYCTLEFPVEVNT---VLHGFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSKKVWYEWAVTAPVCSAIHNPTGRSYTIGL 637          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_DICDI (Protein arginine N-methyltransferase 5 OS=Dictyostelium discoideum GN=prmt5 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.369e-30
Identity = 65/136 (47.79%), Postives = 81/136 (59.56%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFE--IPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGS---------PLEVHFWRCCGSTKVWYEWCVASPNPSPVHNSNGRSYWVGL 392
            +P+FTF+HPN      N RY+ L FE  IPS T     HGF GYFD  LYKDVH+ I PS  +  MFSWF I+FPL+ PV    G+           +  FWR    +KVWYEWC+ SP  +P+ N  GRSY++GL
Sbjct:  511 KPLFTFSHPNRDEIIDNSRYESLEFELTIPSTT----CHGFIGYFDCCLYKDVHISINPSNFSTGMFSWFPIYFPLKQPVYFSNGNLNNNNNNNIKAKCAFWRNVSKSKVWYEWCLLSPTITPIQNVGGRSYYIGL 642          
BLAST of CX290213 vs. ExPASy Swiss-Prot
Match: ANM5_DROME (Protein arginine N-methyltransferase 5 OS=Drosophila melanogaster GN=csul PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.488e-24
Identity = 55/122 (45.08%), Postives = 71/122 (58.20%), Query Frame = 3
Query:   18 EPVFTFTHPNFSTKKSNQRYKKLRFEIPSDTGSSMVHGFAGYFDAMLYKDVHLGIEPSTATPNMFSWFAIFFPLRTPVCIRPGSPLEVHFWRCCGSTKVWYEW-CVASPNPSPVHNSNGRSY 380
            + +F F HPN +    N R K + F++  D    ++HG  GYFD  LYKD+ L I P T TP MFSWF +FF  R P  +R G  + + FWRC  +TKVWYEW  V SP+    HN+ G  Y
Sbjct:  489 QALFEFVHPNRAENIDNTRCKTVSFKVNKDC---VLHGIGGYFDTHLYKDICLSINPLTHTPGMFSWFPMFFATR-PRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHNTRGTGY 606          
The following BLAST results are available for this feature:
BLAST of CX290213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ANM5_ARATH2.197e-6079.20Protein arginine N-methyltransferase 5 OS=Arabidop... [more]
ANM5_ORYSJ8.640e-5775.20Protein arginine N-methyltransferase 5 OS=Oryza sa... [more]
ANM5_ORYSI8.640e-5775.20Protein arginine N-methyltransferase 5 OS=Oryza sa... [more]
ANM5_PONAB2.990e-3349.60Protein arginine N-methyltransferase 5 OS=Pongo ab... [more]
ANM5_MOUSE2.990e-3349.60Protein arginine N-methyltransferase 5 OS=Mus musc... [more]
ANM5_MACFA2.990e-3349.60Protein arginine N-methyltransferase 5 OS=Macaca f... [more]
ANM5_HUMAN2.990e-3349.60Protein arginine N-methyltransferase 5 OS=Homo sap... [more]
ANM5_BOVIN2.990e-3349.60Protein arginine N-methyltransferase 5 OS=Bos taur... [more]
ANM5_DICDI2.369e-3047.79Protein arginine N-methyltransferase 5 OS=Dictyost... [more]
ANM5_DROME1.488e-2445.08Protein arginine N-methyltransferase 5 OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionC02021G03SK IF1 Citrus clementina cDNA clone C02021G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290213 ID=CX290213; Name=CX290213; organism=Citrus clementina; type=EST; length=565bp
AATTCGGCACGAGGGGCGAACCTGTCTTTACATTTACTCATCCAAATTTC
TCAACTAAGAAGAGCAATCAGCGCTACAAAAAGCTGAGGTTTGAGATACC
TAGTGATACTGGGTCATCCATGGTGCATGGGTTCGCTGGTTATTTTGATG
CGATGCTTTACAAAGATGTGCATCTAGGTATTGAGCCATCAACGGCAACA
CCAAACATGTTCAGCTGGTTTGCAATATTTTTTCCACTGAGGACACCGGT
ATGTATTCGACCTGGTTCTCCACTTGAGGTGCATTTTTGGCGTTGTTGTG
GTTCTACCAAGGTTTGGTACGAATGGTGTGTTGCTTCTCCCAATCCATCA
CCTGTTCACAACAGCAATGGTCGTTCGTATTGGGTTGGCCTTTAGCATTT
CCTCTTTCAAAGGTTAGAACACTAGTTACAGACACAGGTGTATGAAAGCT
GTAACCTTATAAAAGTAGATAGCCATTTCAAGAGGAAGTAGAACAGATTT
TCAGCTGTTCAGCTGTTAAGGAACAGAAAAAGAGTGTAAAATTTAATCCA
GACTTTGATTTCAAC
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