CX290217

Overview
NameCX290217
Unique NameCX290217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290217_ssr1 microsatellite CX290217_ssr1:1..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.588e-66
Identity = 126/196 (64.29%), Postives = 143/196 (72.96%), Query Frame = 1
Query:   58 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFW-RTRIQKQIKQAETFXXXXXXXXXXXXXXXXXT------AAYTVEDYSAPQYPLNNNMDPHQAFPLDNMAPIPSEVNENYWNMEDLW 624
            MDK PCNS + EVRKGPWTMEEDLILIN+I+NHGEGVWN++A++AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKN+W RTRIQK IKQAE                          A + VE YS+     N NM  +  +P       P+E N+ +W+MEDLW
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFIGHINPEHSNEQASTSLLSSSCHADHAVESYSS---SFNGNMGNNVQYP----NHFPTESNDYFWSMEDLW 189          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.626e-65
Identity = 131/208 (62.98%), Postives = 149/208 (71.63%), Query Frame = 1
Query:   58 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAE-----TF---XXXXXXXXXXXXXXXXXTAAYTVEDYSAPQYPLNNNMDPHQAFPLDN--MAPIPS-EVNENYWNMEDLW---LYNGD 639
            MDK PCNSQ+ EVRKGPWTMEEDLILINYIANHGEGVWNSLA++AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQLLIMELHAKWGNRWSKIAK LPGRTDNEIKN+WRTRIQK ++Q +     TF                    +A   V D++A      ++  PH     D+   AP P+ + N+N W+MED W   L NGD
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQGDQSSSTTFNNGQMNLDHSCNDQASSSQMSACGPVVDHTAVD---QSSYSPHSFNGNDHTFQAPFPTDQSNDNMWSMEDFWSMQLLNGD 205          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.393e-62
Identity = 130/217 (59.91%), Postives = 148/217 (68.20%), Query Frame = 1
Query:   76 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAE--TFXXXXXXXXXXXXXXXXXTAAYTV--------EDYS-APQYPLNNNMDPHQAFPLDNMA----------PIPSEVN----ENYWNMEDLW----LYNGD 639
            +S EAEVRKGPWTMEEDLILINYIANHG+GVWNSLAK+AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQL+IMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK IKQ++  T                  T+++ V        E YS  P    + NM+    F   N +          P+P  V+    ENYW M+D+W    L NG+
Sbjct:   14 SSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSSVGSHHSSEINDQAASTSSHNVFCTQDQAMETYSPTPTSYQHTNME----FNYGNYSAAAVTATVDYPVPMTVDDQTGENYWGMDDIWSSMHLLNGN 226          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   85 EAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            + E RKGPWT +ED++L+N++   G+  W+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP+E+ L++ELHAKWGNRWSKIA+ LPGRTDNEIKN+WRT ++K+ ++
Sbjct:    5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 68/111 (61.26%), Postives = 92/111 (82.88%), Query Frame = 1
Query:   82 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 414
            QE   RKGPWT +ED++L+N++   G+  W+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP+E+ L++ELHAKWGNRWSKIA+ LPGRTDNEIKN+WRT ++K+ ++
Sbjct:    3 QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 113          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   58 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            M +TPC  ++  +++G WT EED +L NYIA HGEG W SL K AGL R GKSCRLRW+NYLR DVKRGNI+ EE+ +I++LHA  GNRWS IA HLPGRTDNEIKN+W + + +QI
Sbjct:    1 MGRTPC-CEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 116          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 1
Query:   58 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            M ++PC  ++A + KG WT EED +L++YI  HGEG W SL +AAGL+R GKSCRLRW+NYLRPD+KRGN T EE  LI++LH+  GN+WS IA  LPGRTDNEIKN+W T I++++
Sbjct:    1 MGRSPC-CEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.297e-38
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 1
Query:   58 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            M + PC  ++  +++G WT EED IL NYI ++GEG W SL K AGLKR GKSCRLRW+NYLR D+KRGNITPEE+ L+++LH+  GNRWS IA HLPGRTDNEIKN+W + + +++
Sbjct:    1 MGRAPC-CEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKL 116          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.929e-38
Identity = 73/117 (62.39%), Postives = 89/117 (76.07%), Query Frame = 1
Query:   58 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            M ++PC  ++A   KG WT EED  LINYI  HGEG W SL KAAGL R GKSCRLRW+NYLRPD+KRGN T EE  +I++LH+  GN+WS IA  LPGRTDNEIKN+W T I++++
Sbjct:    1 MGRSPC-CEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CX290217 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.438e-38
Identity = 70/117 (59.83%), Postives = 90/117 (76.92%), Query Frame = 1
Query:   58 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 408
            M ++PC  ++A   KG WT EED  L++YI NHGEG W SL K+AGL R GKSCRLRW+NYLRPD+KRGN T +E  +I++LH+  GN+WS IA  LPGRTDNEIKN+W T I++++
Sbjct:    1 MGRSPC-CEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
The following BLAST results are available for this feature:
BLAST of CX290217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB40_ANTMA5.588e-6664.29Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB05_ANTMA1.626e-6562.98Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH6.393e-6259.91Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB59_ARATH1.532e-3960.91Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH1.532e-3961.26Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYBP_MAIZE2.614e-3963.25Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB3_ARATH9.932e-3960.68Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB12_ARATH1.297e-3860.68Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB30_ANTMA4.929e-3862.39Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH6.438e-3859.83Transcription repressor MYB6 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC02021G07SK IF1 Citrus clementina cDNA clone C02021G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290217 ID=CX290217; Name=CX290217; organism=Citrus clementina; type=EST; length=717bp
TTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCTTAATTTCTCTATGTAAA
TTAAGAGATGGATAAAACTCCATGCAATTCTCAAGAAGCTGAAGTCCGAA
AGGGGCCATGGACCATGGAAGAAGACTTGATCCTCATCAACTATATAGCA
AATCACGGCGAAGGCGTCTGGAACTCACTAGCTAAAGCAGCTGGCCTAAA
ACGTACCGGAAAGAGTTGCCGGCTCAGGTGGCTGAACTATCTCCGACCGG
ACGTTAAGAGGGGGAATATTACACCAGAGGAGCAGCTTTTGATCATGGAG
CTTCATGCCAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTACC
AGGAAGGACCGACAATGAAATTAAGAATTTTTGGAGAACCAGAATCCAGA
AGCAAATTAAGCAAGCAGAAACATTTTCAGGGCAAAGTTCAGAGGCCAAT
GAGCAAGCAAGCTCAAGCCAAATGTCCACTGCTGCATACACGGTGGAAGA
TTATTCAGCACCACAATATCCATTAAACAATAATATGGATCCTCATCAAG
CTTTTCCATTAGATAATATGGCACCTATTCCTTCTGAAGTTAATGAAAAC
TACTGGAATATGGAGGATCTCTGGTTATATAACGGGGATTAAGCATCATG
ATTATTTATATGCAGGGGTTCGAGTAATGATTTTGGATCCCTTATATATT
AGCGGGGCTTAAACTTT
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