CX290233

Overview
NameCX290233
Unique NameCX290233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10616 contig Ccv1_Contig10616:120..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 1.821e-105
Identity = 192/203 (94.58%), Postives = 198/203 (97.54%), Query Frame = 3 
Query:   57 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD VVLGVEKKS  KLQD+R VRKIV+LD+HIALACAGLKADARVL+NRAR+ECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTG PSLYQTDPSGTFSAWKANATGRNSNSIREFLEKN+KETSGQETVKLAIRALLEVVESGGK
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFKETSGQETVKLAIRALLEVVESGGK 203
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 2.378e-105
Identity = 192/203 (94.58%), Postives = 198/203 (97.54%), Query Frame = 3 
Query:   57 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            MARYDRAITVFSPDGHLFQVEYA+EAVRKGNAAVGVRGTD VVLGVEKKS  KLQDSR VRKIV+LD+HIALACAGLKADARVLVN+ARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLI+GFDP+TGVPSLYQTDPSGTFSAWKANATGRNSNS REFLEKNYKETSGQETVKLAIRALLEVVESGGK
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNYKETSGQETVKLAIRALLEVVESGGK 203
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 5.858e-104
Identity = 189/203 (93.10%), Postives = 196/203 (96.55%), Query Frame = 3 
Query:   57 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD VVL VEKKS  KLQDSR  RKIVSLDNHIALACAGLKADARVL+N+ARIECQSHRLT+EDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT +P+LYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE++GQETVKLAIRALLEVVESGGK
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESAGQETVKLAIRALLEVVESGGK 203
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 376.326 bits (965), Expect = 7.651e-104
Identity = 189/203 (93.10%), Postives = 196/203 (96.55%), Query Frame = 3 
Query:   57 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD VVL VEKKS  KLQDSR  RKIVSLDNHIALACAGLKADARVL+N+ARIECQSHRLT+EDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPY+ +PSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE+SGQET+KLAIRALLEVVESGGK
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESSGQETIKLAIRALLEVVESGGK 203
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 3.797e-103
Identity = 187/203 (92.12%), Postives = 195/203 (96.06%), Query Frame = 3 
Query:   57 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD VVLGVEKKS  KLQDSR +RKI SLD HIALACAGLKADARVL+NRAR+ECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT  P+LYQTDPSGTFSAWKANATGRNSNS+REFLEKNYK+TSG+ET+KLAIRALLEVVESGGK
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKDTSGKETIKLAIRALLEVVESGGK 203
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 374.015 bits (959), Expect = 3.797e-103
Identity = 187/203 (92.12%), Postives = 195/203 (96.06%), Query Frame = 3 
Query:   57 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD VVLGVEKKS  KLQDSR +RKI SLD HIALACAGLKADARVL+NRAR+ECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT  P+LYQTDPSGTFSAWKANATGRNSNS+REFLEKNYK+TSG+ET+KLAIRALLEVVESGGK
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKDTSGKETIKLAIRALLEVVESGGK 203
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.443e-102
Identity = 187/203 (92.12%), Postives = 194/203 (95.57%), Query Frame = 3 
Query:   57 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRG+D VVLGVEKKS  KLQDSR VRKI SLD HIALACAGLKADARVL+NRAR+ECQSHRLTVED VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT  P+LYQTDPSGTFSAWKANATGRNSNS+REFLEKNYKETSG+ET+KLAIRALLEVVESGGK
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGKETIKLAIRALLEVVESGGK 203
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.443e-102
Identity = 187/203 (92.12%), Postives = 194/203 (95.57%), Query Frame = 3 
Query:   57 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVESGGK 665
            MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRG+D VVLGVEKKS  KLQDSR VRKI SLD HIALACAGLKADARVL+NRAR+ECQSHRLTVED VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT  P+LYQTDPSGTFSAWKANATGRNSNS+REFLEKNYKETSG+ET+KLAIRALLEVVESGGK
Sbjct:    1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGKETIKLAIRALLEVVESGGK 203
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.834e-81
Identity = 151/205 (73.66%), Postives = 176/205 (85.85%), Query Frame = 3 
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE---TSGQETVKLAIRALLEVVESGGK 665
            +RYDRAITVFSPDGHLFQVEYA EAV+KG+ AVG+RGT+IVVLGVEKKS  KLQD R VRKI +LD+H+ +A AGL ADARV++NRAR+ECQSH+LTVEDPVTVEYITR+IA L+QKYTQS G RPFG+S LIVGFD   G+P LYQTDPSGT+ AWKANA GR++ ++REFLEKNY E    S  E +KLAI+ALLEVV+SGGK
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD-DGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQSGGK 206
[Close]
BLAST of CX290233 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 6.968e-81
Identity = 149/205 (72.68%), Postives = 174/205 (84.88%), Query Frame = 3 
Query:   60 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE---TSGQETVKLAIRALLEVVESGGK 665
            ARYDRAITVFSPDGHLFQVEYA EAV+KG+ AVG+RG DIVVLGVEKKS  KLQ+ R VRKI +LD H+ +A AGL ADAR+++NRAR+ECQSHRLTVEDPVTVEYITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR++ ++REFLEKNY +    S  + +KLAI+ALLEVV+SGGK
Sbjct:    3 ARYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQSGGK 206
The following BLAST results are available for this feature:
BLAST of CX290233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSA7_CICAR1.821e-10594.58Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7_SOLLC2.378e-10594.58Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA7A_ARATH5.858e-10493.10Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA7B_ARATH7.651e-10493.10Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA7A_ORYSJ3.797e-10392.12Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI3.797e-10392.12Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7B_ORYSJ1.443e-10292.12Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI1.443e-10292.12Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7L_MACFA1.834e-8173.66Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA7_CARAU6.968e-8172.68Proteasome subunit alpha type-7 OS=Carassius aurat... [more]

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Properties
Property NameValue
Genbank descriptionC02021H11SK IF1 Citrus clementina cDNA clone C02021H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290233 ID=CX290233; Name=CX290233; organism=Citrus clementina; type=EST; length=667bp
AGGAAAAAATCCATTCAAATAAAAAACAAACTCGAGACCGAAAAAAGGAA
GACAAAATGGCTCGATACGATCGCGCGATCACGGTATTTTCTCCGGACGG
CCATCTATTCCAAGTCGAATACGCGCTTGAAGCCGTCCGTAAAGGAAACG
CCGCCGTTGGGGTCCGCGGCACCGACATTGTCGTCCTCGGCGTCGAGAAA
AAATCCGCCGTCAAGCTCCAAGACTCCAGAATGGTGAGGAAGATTGTGTC
ATTGGATAATCACATTGCACTTGCCTGTGCGGGTCTGAAAGCGGATGCAC
GTGTCTTGGTTAACAGAGCGCGTATTGAATGTCAGAGTCATAGGCTTACC
GTAGAGGATCCTGTCACAGTTGAATATATAACGCGGTACATTGCTGGGCT
TCAGCAGAAGTATACACAGAGTGGTGGGGTGAGGCCTTTTGGTCTTTCGA
CCCTGATTGTTGGTTTTGACCCCTATACAGGTGTGCCATCTCTTTATCAG
ACTGATCCATCGGGAACTTTTTCAGCATGGAAAGCCAATGCCACGGGGAG
GAACTCAAATTCAATAAGGGAGTTCTTGGAGAAAAATTATAAAGAAACCT
CTGGGCAAGAAACTGTGAAGTTGGCCATTCGTGCTTTGCTTGAAGTTGTT
GAGAGTGGAGGCAAGAA
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