CX290240

Overview
NameCX290240
Unique NameCX290240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length450
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290240 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.383e-14
Identity = 40/63 (63.49%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 VKLNKQIWXXXXXXXXXXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 189
            VKLNKQIW                   NDDEDAKEELYSLVTVAEIP +GL+GLGTK+IEDED
Sbjct:   58 VKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120          
BLAST of CX290240 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.997e-13
Identity = 39/63 (61.90%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 VKLNKQIWXXXXXXXXXXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 189
            VKLNKQIW                   NDDEDAKEE +SLVTVAEIP EGL GLGTKVIE+ED
Sbjct:   57 VKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119          
BLAST of CX290240 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.608e-13
Identity = 38/63 (60.32%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 VKLNKQIWXXXXXXXXXXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 189
            VKLNKQIW                   NDDEDAKEE +SLVTVAEIP EGL GLGTK+IE+ED
Sbjct:   57 VKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119          
BLAST of CX290240 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.406e-13
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 VKLNKQIWXXXXXXXXXXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 189
            VKLNK +W                   ND+EDAK+ELYS+VTVAE+PPEGL GLGTK+IE+ED
Sbjct:   58 VKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120          
BLAST of CX290240 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.809e-13
Identity = 38/63 (60.32%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 VKLNKQIWXXXXXXXXXXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 189
            VKLNKQIW                   NDDEDAKEE +SLVTVAEIP EGL GLGTKVIE+E+
Sbjct:   57 VKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119          
BLAST of CX290240 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 VKLNKQIWXXXXXXXXXXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 189
            VKLNK IW                   NDDEDAKEELYSLVTVAEIP  GL+GLGT+VI++E+
Sbjct:   59 VKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121          
BLAST of CX290240 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 VKLNKQIWXXXXXXXXXXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKVIEDED 189
            VKLNKQIW                   NDDEDAKEELYSLVTVA+IP   L+GLG ++IE++D
Sbjct:   58 VKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120          
The following BLAST results are available for this feature:
BLAST of CX290240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RL31_NICGU1.383e-1463.4960S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL313_ARATH1.997e-1361.9060S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL312_ARATH2.608e-1360.3260S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL31_PICMA3.406e-1355.5660S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL311_ARATH5.809e-1360.3260S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL31_PERFR4.918e-1257.1460S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL31_PANGI7.102e-1153.9760S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
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Properties
Property NameValue
Genbank descriptionC02022A08SK IF1 Citrus clementina cDNA clone C02022A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290240 ID=CX290240; Name=CX290240; organism=Citrus clementina; type=EST; length=450bp
GTCAAATTGAACAAGCAAATCTGGAGCAGGGGCATCCGAAGTGTTCCAAG
GAGGGTTAGGGTTCGCATTGCTCGCAGGAGGAACGATGATGAAGACGCTA
AGGAAGAGCTGTACTCTCTTGTAACTGTTGCAGAAATCCCACCAGAAGGA
CTGAGGGGGCTTGGCACCAAGGTCATTGAAGATGAGGATTAAGTTTAACA
CTCTGTTCAAAGAAAACCGTTGGATAGGCAGGATAGGTTTACATGATAGT
TTTGGCATGCTATTCAAGTGTTATGAGAAAGACTAGTGTTTTTTTCCATC
TGTTTGAACTTTAATGTGTTGTTTTGGATGGAGTTGCTTTTTAGATTGTT
ACCAATGGCTTGTTAGAAAAGTCAAAAGTTACTTTCCAATTGAATTTCCC
TTTTAGATAAATGCCATATTTATGGCTTCTGAGAAAAAAAAAAAAAAAAA
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