CX290243

Overview
NameCX290243
Unique NameCX290243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig275 contig Ccv1_Contig275:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.414e-72
Identity = 137/215 (63.72%), Postives = 169/215 (78.60%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDY-----AYHVQPIQPNLQERI 648
            GRGKIEIKRIEN+SNRQVTYSKRRNGI+KKAKEITVLCDAKVSLII+ +SGKMH+YCSPST+L D+L+ Y + SGRRLWD KHENLSNEI+RIK+END MQ+KLRHL GEDI+SLN KEL+ LE+ L NGL SI  KQSE +  +RKN +++EEEH  L++ L Q+E+A     + M      E+ +QR+  ++Y     A  VQP+QPNL ER+
Sbjct:    2 GRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEMAAMGGNMRM----IEEVYHQRDRDYEYQQMPFALRVQPMQPNLHERM 212          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.068e-70
Identity = 136/213 (63.85%), Postives = 170/213 (79.81%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHD----YAYHVQPIQPNLQER 645
            GRGKIEIKRIEN+SNRQVTYSKRRNGILKKAKEI+VLCDA+VS+II+ASSGKMH++ S  TSLVDIL+QYH+ +GRRLWD KHENL NEI ++K++ND MQI+LRHL GEDI+SLN +EL+ LEDAL+NGL SIR+KQ++ +  MRK  + MEEE + L + LRQ EIA   + +        E+ +QREN +     +A+ VQP+QPNLQER
Sbjct:    2 GRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSS--TSLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLRMMRKKTQSMEEEQDQLNWQLRQLEIASMNRNM----GEIGEVFHQRENEYQTQMPFAFRVQPMQPNLQER 208          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.313e-70
Identity = 131/213 (61.50%), Postives = 167/213 (78.40%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQR----ENHHDYAYHVQPIQPNLQER 645
            GRGKIEIKRIEN+SNRQVTYSKRRNGI+KKAKEI+VLCDA VS+II+ASSGKMH++CSPST+LVD+L+ YH+ SG+RLWDPKHE+L NEI R+K+END MQI+LRHL GEDI++LN KEL+ LEDALENG  ++++KQ E +  MRK+ +M+EEE+  L+F LRQ  +      +    +V     +Q     E    +A+ VQP+QPNLQER
Sbjct:    2 GRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNVMESQAVYDHHHHQNIADYEAQMPFAFRVQPMQPNLQER 214          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.019e-69
Identity = 135/211 (63.98%), Postives = 168/211 (79.62%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEID-YQRENHHDYAYHVQPIQPNLQERI 648
            GRGKIEIKRIEN+SNRQVTYSKRRNGILKKAKEI+VLCDA+VS+II+ASSGKMH++ S  TSLVDIL+QYH+ +GRRL D KHENL NEI ++K++ND MQI+LRHL GEDI+SLN +EL+ LEDALENGL SIR+KQ+E +  MRK  + MEEE + L   LRQ EIA   + +     V  + + +  +NH  +A+ VQP+QPNLQER+
Sbjct:    2 GRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSS--TSLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQLEIATMNRNMGEIGEVFQQRENHDYQNHMPFAFRVQPMQPNLQERL 210          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.956e-64
Identity = 126/210 (60.00%), Postives = 157/210 (74.76%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYHVQPIQPNLQERI 648
            GRGKIEIKRIENA+NR VT+SKRRNG++KKAKEITVLCDAKV+LII+AS+GKM DYC PS  L  +L+QY + SG++LWD KHENLSNEI+RIK+END +Q++LRHL GEDI SLN K L+A+E A+E+GL  +RD Q E + + R+N KMM EE   L F L+QQE+A       M           R++   + Y VQPIQPNLQE+I
Sbjct:    2 GRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASNARGM---------MMRDHDGQFGYRVQPIQPNLQEKI 202          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.985e-60
Identity = 115/208 (55.29%), Postives = 155/208 (74.52%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYHVQPIQPNLQE 642
            GRGKIEIKRIEN++NRQVT+SKRR+GILKKA+EI+VLCDA+V ++I++S+GK++DYCSP TSL  ILE+Y   SG+ LWD KH++LS EI+RIK+END MQI+LRHL GED++SL PKELI +E+AL+NG+V++ DK  +  E   +  KM+E+E+  L F L QQ+IA       +E     + D+  +      + VQP  PNLQE
Sbjct:    2 GRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDKLMDHWERHVRTDKMLEDENKLLAFKLHQQDIALSGSMRDLELGYHPDRDFAAQ--MPITFRVQPSHPNLQE 207          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 5.703e-56
Identity = 115/222 (51.80%), Postives = 155/222 (69.82%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLV-----DILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHD---------YAYHVQPIQPNLQE 642
            GRGKIEIKRIEN++NRQVT+SKRR GILKKA+EI VLCDA+V ++I++S+GK+ DYC+P T+ V      ILE+Y   SG+ LWD KH++LS EI+R+K+END MQI+LRH+ GED++SL PKELIA+E+AL NG  ++RDK  +     ++N KM+E+EH  L F + QQE+     EL+       E+ Y    HHD         + + VQP  PNLQ+
Sbjct:    2 GRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDEHKMLAFRVHQQEV-----ELS-GGIRELELGY----HHDDRDFAASMPFTFRVQPSHPNLQQ 213          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.387e-40
Identity = 90/224 (40.18%), Postives = 147/224 (65.62%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQS----EKMETMRKNGKMMEEEHNYLKFVLRQQEIARQ-QQELAME-----------NSVSAEIDYQRENHHDYAYHVQPIQPNLQE 642
            GRGKIEIKRIEN +NRQVT+SKRR G+LKKA E++VLCDA++ LII++SSGK+ +Y S S+S+  I+E+Y + SG R+ +  +++L  E+ R+K EN+++Q  +R + GED++SL   EL  L   LE+    +R +++    +++E +R+  +++E+++++L  +L +Q+ A +  QE  +E            + +A        HH  A+ +QP QPNLQE
Sbjct:    2 GRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQEPLLEFGVFCPPPDNKTAAAANAGPLHLGHHLPAFRLQPTQPNLQE 225          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 8.562e-36
Identity = 82/210 (39.05%), Postives = 127/210 (60.48%), Query Frame = 1
Query:   19 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQEIA-RQQQELAMENSVSAEID---YQRENHHDYAYHVQPIQPNL 636
            GRGKIEIKRIENA+NRQVTYSKRR GI+KKA+E+TVLCDA+V++I+++S+GK H++CSPST +  I ++Y +  G  LW  ++EN+   +  +K  N  ++ ++R   GED+  L   EL  LE  ++  L  +R ++   + T  +  K  + +H+Y  +   QQE+  R++      ++     D           +A+ V P QPNL
Sbjct:    2 GRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYK-KKVKHSYEAYETLQQELGLREEPAFGFVDNTGGGWDGGAGAGAAADMFAFRVVPSQPNL 210          
BLAST of CX290243 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.136e-34
Identity = 81/212 (38.21%), Postives = 130/212 (61.32%), Query Frame = 1
Query:   22 RGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQ----SEKMETMRKNGKMMEEEHN--YLKFVLRQQEIARQQQELAMENSVSAEIDYQRENHHDYAYHVQP--IQPN 633
            RGKI+IKRIEN +NRQVTYSKRRNG+ KKA E+TVLCDAKVS+I+ +S+GK+H++ SPS +   + + Y +  G  LW+  +E +  ++ ++K  N  ++ ++R   GE ++ LN ++L  L + ++N L  IR+++      ++ET +K  + +EE H    L+F  RQ++     ++    NSV   + +    H   A  +QP   QPN
Sbjct:    3 RGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEFDARQEDPYGLVEQEGDYNSV---LGFPNGGHRILALRLQPNHHQPN 211          
The following BLAST results are available for this feature:
BLAST of CX290243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MADS2_PETHY7.414e-7263.72Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GLOB_TOBAC4.068e-7063.85Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
GLOB_ANTMA5.313e-7061.50Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
FBP1_PETHY2.019e-6963.98Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
PIST_ARATH1.956e-6460.00Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MADS2_ORYSJ4.985e-6055.29MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MADS4_ORYSJ5.703e-5651.80MADS-box transcription factor 4 OS=Oryza sativa su... [more]
GGM13_GNEGN4.387e-4040.18MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD16_ORYSJ8.562e-3639.05MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MADS1_PETHY6.136e-3438.21Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionC02022B01SK IF1 Citrus clementina cDNA clone C02022B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290243 ID=CX290243; Name=CX290243; organism=Citrus clementina; type=EST; length=750bp
CGAATTCGGCACGAGGGGGGAAGAGGCAAGATTGAGATCAAGAGAATAGA
GAACGCAAGCAACAGGCAGGTGACTTATTCAAAGAGAAGAAATGGAATCC
TCAAGAAGGCAAAGGAGATCACTGTGCTGTGTGATGCTAAAGTTTCTCTC
ATCATTTACGCTAGCTCTGGCAAGATGCACGATTACTGTAGCCCTTCTAC
TTCGTTGGTTGATATTTTGGAGCAATATCACCGGCAGTCAGGGAGGAGAT
TGTGGGATCCCAAGCATGAGAACCTCAGCAATGAAATTGAAAGAATCAAG
AGAGAGAATGATAGAATGCAGATCAAGCTCAGGCACCTAAATGGGGAGGA
TATCTCATCTCTGAACCCTAAAGAACTCATAGCCTTAGAGGATGCCCTCG
AAAATGGTCTTGTCAGCATCCGCGACAAACAGAGTGAAAAGATGGAAACG
ATGAGGAAAAATGGAAAAATGATGGAGGAGGAGCATAATTACCTCAAATT
TGTTCTGAGGCAACAGGAGATTGCGAGACAGCAACAGGAGCTTGCTATGG
AGAATAGTGTGAGTGCTGAGATTGATTATCAAAGAGAGAATCATCATGAC
TATGCCTACCATGTGCAGCCTATTCAGCCTAATCTTCAAGAAAGGATCTA
ATAGCACTTTCGGATTCCTTTCTTGAAAGCACTTTAAACATTTTAGGTTC
TGTGATGGAATTAGTGACCTCGATATATATTAATGAAATTACCTCGTTAT
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