CX290246

Overview
NameCX290246
Unique NameCX290246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX290246 vs. ExPASy Swiss-Prot
Match: YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 3 
Query:  426 SSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKFKILR 704
            S  L K LNP    +G+R+PD  F++ +A+  E  LALTSANL+ Q SS++V++F++LW + + V DGG +     P  R GSTVVDL+  GKF I+R
Sbjct:  156 SEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIR 253
[Close]
BLAST of CX290246 vs. ExPASy Swiss-Prot
Match: YRDC_MOUSE (YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 3 
Query:  426 SSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKFKILR 704
            S  L K LNP    +G+R+PD  F+  +A+     LALTSANL+ Q SS+SV++F++LW   + V DGG +     P  R GSTVVDL+  GKF I+R
Sbjct:  157 SEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIR 254
[Close]
BLAST of CX290246 vs. ExPASy Swiss-Prot
Match: YRDC_RAT (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 3 
Query:  426 SSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKFKILR 704
            S  L K LNP    +G+R+PD  F+  +A+     LALTSANL+ Q SS+SV++F++LW   + V DGG +     P  R GSTVVDL+  GKF I+R
Sbjct:  157 SEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIR 254
[Close]
BLAST of CX290246 vs. ExPASy Swiss-Prot
Match: YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 3 
Query:  426 SSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVL-----PSGRAGSTVVDLTRLGKFKILR 704
            S  L K LNP    +G+R+PD  F++ +A+     LALTSANL+ Q SS++V++F++LW   + + DGG +     P  R GSTVVDL+  GKF I+R
Sbjct:  154 SEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIR 251
The following BLAST results are available for this feature:
BLAST of CX290246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YRDC_HUMAN1.357e-1646.94YrdC domain-containing protein, mitochondrial OS=H... [more]
YRDC_MOUSE8.793e-1646.94YrdC domain-containing protein, mitochondrial OS=M... [more]
YRDC_RAT1.148e-1546.94YrdC domain-containing protein, mitochondrial OS=R... [more]
YRDC_BOVIN1.500e-1544.90YrdC domain-containing protein, mitochondrial OS=B... [more]
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Properties
Property NameValue
Genbank descriptionC02022B04SK IF1 Citrus clementina cDNA clone C02022B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290246 ID=CX290246; Name=CX290246; organism=Citrus clementina; type=EST; length=705bp
GTTAAATTGAATTTTAATACTCCATGTTAGACATGGGCAGATCGCTCATT
GGATCACCCATGATAGGCTGACTTGACACAAGATGTGATGGTAGTTATCC
CACTTACAACGTGTCAAAGAGTTTTTGGGGAAGTGCCGGGAGAAGTTGGT
GAGAAGTAGTTCTTTGGAAGCCTAACTTCTCTCCATCTTGCTATCATCTC
TAATAATTCACATAAAATTGAACAAGCGGAGAATACAACATTGTAGAAAG
CGCAAAAGCAGATGCAATTGGCAAAGAACAAATACAAAGAGTTTTTAAGA
ACTTCAAAAGGATTTAGTCTGGCCATGTAGCAATTGTTTGGGTTCTTCTG
CTGTGAATCGAGGAAGCTTTAGAATTACGTGATAGCTTCCCAACCAATTA
TGAATACGGATTCAACCTTGGCGAGTCAAGTAACCTTGAGAAGTCCTTGA
ATCCTGGATTGGAAAGTATAGGTGTCCGAGTGCCCGATTCCAACTTTGTC
AGGGTTATTGCCCGCGGTTTGGAAAGTGCATTGGCTCTCACAAGTGCAAA
TCTAACTGGACAGCCAAGTAGTGTTAGCGTCAAAGATTTTGAGAACTTAT
GGGAACGCTGTGCGTGCGTTTATGATGGTGGAGTGCTTCCATCAGGTCGT
GCGGGATCAACAGTTGTGGATCTCACCAGGCTAGGAAAGTTCAAGATTCT
TCGAC
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