CX290262

Overview
NameCX290262
Unique NameCX290262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290262 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.417e-16
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  268 KFGVQLLQNAPKMPVYSIASATGFDRSIVVEKLLEQDNRDLVYDPATGIFL 420
            K GVQ++QNA K PVY+IAS  G + ++VV KLLEQDN DL YD A G ++
Sbjct:  468 KIGVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYV 518

HSP 2 Score: 43.1282 bits (100), Expect = 3.417e-16
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:   74 KRVARLSQAVR-FKVDRASNCI------RVDNIVRATEMAMKFGILPGGGVALINVSKELDKL 241
            +R+A+LS  V   K+  AS         RV + + AT+ A++ GI+PGGGVAL+  SKEL+KL
Sbjct:  398 ERLAKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELEKL 460
[Close]
BLAST of CX290262 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.419e-16
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  268 KFGVQLLQNAPKMPVYSIASATGFDRSIVVEKLLEQDNRDLVYDPATGIFL 420
            K GVQ++QNA K PV++IAS  G + ++VV KLLEQDN DL YD A G ++
Sbjct:  468 KIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYV 518

HSP 2 Score: 45.0542 bits (105), Expect = 3.419e-16
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:   74 KRVARLSQAVR-FKVDRASNCI------RVDNIVRATEMAMKFGILPGGGVALINVSKELDKL 241
            +R+A+LS  V   K+  AS         RV + + AT+ A++ GI+PGGGVAL+  SKELDKL
Sbjct:  398 ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKL 460
[Close]
BLAST of CX290262 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 5.772e-16
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  268 KFGVQLLQNAPKMPVYSIASATGFDRSIVVEKLLEQDNRDLVYDPATGIFL 420
            K GVQ++QNA K PVY+IAS  G + +++V KLLE DN DL YD A G ++
Sbjct:  471 KIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLESDNPDLGYDAAKGEYV 521

HSP 2 Score: 44.669 bits (104), Expect = 5.772e-16
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:   74 KRVARLSQAVR-FKVDRASNCI------RVDNIVRATEMAMKFGILPGGGVALINVSKELDKL 241
            +R+A+LS  V   K+  AS         RV + + AT+ A++ GI+PGGGVAL+  SKELDKL
Sbjct:  401 ERLAKLSGGVAVLKIGGASESEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKL 463
[Close]
BLAST of CX290262 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 7.505e-16
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  268 KFGVQLLQNAPKMPVYSIASATGFDRSIVVEKLLEQDNRDLVYDPATGIFL 420
            K GVQ++QNA K PVY+IAS  G + +++V KLLEQDN DL YD A G ++
Sbjct:  467 KIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYV 517

HSP 2 Score: 42.3578 bits (98), Expect = 7.505e-16
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:   74 KRVARLSQAVR-FKVDRASNCI------RVDNIVRATEMAMKFGILPGGGVALINVSKELDKL 241
            +R+A+LS  V   K+  AS         RV + + AT+ A++ GILPGGGVAL+  ++EL+KL
Sbjct:  397 ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKL 459
[Close]
BLAST of CX290262 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 7.505e-16
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  268 KFGVQLLQNAPKMPVYSIASATGFDRSIVVEKLLEQDNRDLVYDPATGIFL 420
            K GVQ++QNA K PV++IAS  G + ++VV KLLEQ+N DL YD A G ++
Sbjct:  470 KIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDAAKGEYV 520

HSP 2 Score: 45.0542 bits (105), Expect = 7.505e-16
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:   74 KRVARLSQAVR-FKVDRASNCI------RVDNIVRATEMAMKFGILPGGGVALINVSKELDKL 241
            +R+A+LS  V   K+  AS         RV + + AT+ A++ GI+PGGGVAL+  SKELDKL
Sbjct:  400 ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKL 462
[Close]
BLAST of CX290262 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.267e-15
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  268 KFGVQLLQNAPKMPVYSIASATGFDRSIVVEKLLEQDNRDLVYDPATGIFL 420
            K GVQ++QNA K PV++IAS  G + ++VV KLLEQD+ DL YD A G ++
Sbjct:  468 KIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDDPDLGYDAAKGEYV 518

HSP 2 Score: 45.0542 bits (105), Expect = 1.267e-15
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:   74 KRVARLSQAVR-FKVDRASNCI------RVDNIVRATEMAMKFGILPGGGVALINVSKELDKL 241
            +R+A+LS  V   K+  AS         RV + + AT+ A++ GI+PGGGVAL+  SKELDKL
Sbjct:  398 ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKL 460
[Close]
BLAST of CX290262 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 7.929e-15
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  268 KFGVQLLQNAPKMPVYSIASATGFDRSIVVEKLLEQDNRDLVYDPA 405
            K GVQ++QNA K PV++IAS  G + ++VV KLLEQ N DL YD A
Sbjct:  470 KIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQGNTDLGYDAA 515

HSP 2 Score: 45.0542 bits (105), Expect = 7.929e-15
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:   74 KRVARLSQAVR-FKVDRASNCI------RVDNIVRATEMAMKFGILPGGGVALINVSKELDKL 241
            +R+A+LS  V   K+  AS         RV + + AT+ A++ GI+PGGGVAL+  SKELDKL
Sbjct:  400 ERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKL 462
[Close]
BLAST of CX290262 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 1.483e-12
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  274 GVQLLQNAPKMPVYSIASATGFDRSIVVEKLLEQDNRDLVYDPATGIFL 420
            GVQ++QNA K P ++IA+  G+D S+VV KLLEQD+ +  +D A G ++
Sbjct:  469 GVQIVQNALKAPAFTIAANAGYDGSLVVGKLLEQDDCNFGFDAAKGKYV 517

HSP 2 Score: 40.817 bits (94), Expect = 1.483e-12
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 2 
Query:   74 KRVARLSQAVR-FKVDRASNCI------RVDNIVRATEMAMKFGILPGGGVALINVSKELDKL 241
            +R+++LS  V  FKV  AS         RV + + AT  A++ GI+PGGGVAL+  +K LD L
Sbjct:  397 ERLSKLSGGVAVFKVGGASESEVGERKDRVTDALNATRAAVEEGIIPGGGVALLYATKALDNL 459
The following BLAST results are available for this feature:
BLAST of CX290262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CH60B_ARATH3.417e-1658.82Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH62_CUCMA3.419e-1656.86Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH60_BRANA5.772e-1654.90Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60A_ARATH7.505e-1656.86Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH61_MAIZE7.505e-1654.90Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH61_CUCMA1.267e-1554.90Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH62_MAIZE7.929e-1558.70Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60C_ARATH1.483e-1248.98Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC02022C09SK IF1 Citrus clementina cDNA clone C02022C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290262 ID=CX290262; Name=CX290262; organism=Citrus clementina; type=EST; length=703bp
GTTGAGATCCGCAATAAAAAAAAAAAAAAAAAAAACTAGAAAAAAAAAAA
GAGCCTGTAGTCTTATTTATTGGAAGAGAGTTGCACGTCTTTCTCAAGCT
GTTAGGTTTAAGGTTGATAGAGCTAGTAATTGTATTAGAGTTGACAATAT
TGTACGGGCTACCGAGATGGCAATGAAATTCGGAATTTTACCTGGTGGTG
GGGTTGCTCTTATTAATGTCTCAAAGGAGCTGGACAAATTGCATGCGACC
TGCAACCGCTGATGTCAAAGTTTGGAGTTCAGCTTTTACAGAATGCTCCT
AAGATGCCCGTATACTCAATTGCTTCTGCTACTGGATTTGATCGCTCCAT
TGTTGTTGAAAAGCTATTAGAACAGGACAATCGTGATCTGGTATACGATC
CGGCTACAGGTATTTTTCTCAGATAAGAATGTGATCATCTTTGTTGTGTA
CCAGGTGATTGTATAGAGACTTTCAAGTCTGGAAATACTGATTTGGTTAG
TTGACATCTTAATTTCTGAATTAGAAACCGCAGTAAGGTAACTCGTTTTA
ACCCTCTTAAAATATTTTAATAAACAGTAGTTATTGCTAATCCTTTTATT
AATTTATCTATCCTCTCTTTGTGGATCCTAAGGATGGCCCATTTCATCTT
CCTTGTACGACAGCGATTTCAAATGTACGTCTCAAGGCTCGATATCCATA
TTG
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