CX290278

Overview
NameCX290278
Unique NameCX290278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 1.964e-103
Identity = 176/239 (73.64%), Postives = 199/239 (83.26%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGL-KPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTSKGSDYI 717
            F   L HIDQRN E+ SYWLGLNEFAD++HEEFK +YLGL KPQF  +RQPSA F YRD+  LPKSVDWRKKGAV PVK+QG CGSCWAFSTVAAVEGINQI +GNL+SLSEQELIDCDT+FN+GCNGGLMDYAF+YI+++GGLHKE+DYPYL                 ISGY+DVPEND++SL+KALAHQPVSV IEASG DFQFY GGVF G CG +LDHGVAAVGYG+SKGSDY+
Sbjct:   75 FRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCDTTFNSGCNGGLMDYAFQYIISTGGLHKEDDYPYLMEEGICQEQKEDVERVTISGYEDVPENDDESLVKALAHQPVSVAIEASGRDFQFYKGGVFNGKCGTDLDHGVAAVGYGSSKGSDYV 313          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 3.588e-97
Identity = 173/240 (72.08%), Postives = 194/240 (80.83%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPS--AEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTSKGSDYI 717
            F   LKHID+ NK+  SYWLGLNEFAD+SHEEFK  YLGLK     R +    AEF+YRDVEA+PKSVDWRKKGAV  VKNQGSCGSCWAFSTVAAVEGIN+IV+GNLT+LSEQELIDCDT++NNGCNGGLMDYAF+YIV +GGL KEEDYPY                  I+G+QDVP NDE+SLLKALAHQP+SV I+ASG +FQFYSGGVF G CG +LDHGVAAVGYG+SKGSDYI
Sbjct:   75 FKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRDEERSYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCDTTYNNGCNGGLMDYAFEYIVKNGGLRKEEDYPYSMEEGTCEMQKDESETVTINGHQDVPTNDEKSLLKALAHQPLSVAIDASGREFQFYSGGVFDGRCGVDLDHGVAAVGYGSSKGSDYI 314          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.575e-74
Identity = 127/237 (53.59%), Postives = 166/237 (70.04%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTSKGSDY 714
            F   L+ +D+ N++  SY LGL  FAD++++E+++KYLG K +    R+ S  +  R  + LP+S+DWRKKGAV  VK+QG CGSCWAFST+ AVEGINQIV+G+L +LSEQEL+DCDTS+N GCNGGLMDYAF++I+ +GG+  ++DYPY                  I  Y+DVP   E+SL KA+AHQP+S+ IEA G  FQ Y  G+F G CG +LDHGV AVGYGT  G DY
Sbjct:   76 FKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCDTSYNEGCNGGLMDYAFEFIIKNGGIDTDKDYPYKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIFDGSCGTQLDHGVVAVGYGTENGKDY 312          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.242e-73
Identity = 136/241 (56.43%), Postives = 167/241 (69.29%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKE----VTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTSKGSDY 714
            F   L++ID+ N      V S+ LGLN FAD+++EE+++ YLGL+ +    R+ S  +   D EALP+SVDWR KGAV  +K+QG CGSCWAFS +AAVEGINQIV+G+L SLSEQEL+DCDTS+N GCNGGLMDYAF +I+ +GG+  E+DYPY                  I  Y+DV  N E SL KA+A+QPVSV IEA G  FQ YS G+FTG CG  LDHGVAAVGYGT  G DY
Sbjct:   64 FRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFDFIINNGGIDTEDDYPYKGKDERCDVNRKNAKVVTIDSYEDVTPNSETSLQKAVANQPVSVAIEAGGRAFQLYSSGIFTGKCGTALDHGVAAVGYGTENGKDY 304          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.088e-69
Identity = 131/230 (56.96%), Postives = 158/230 (68.70%), Query Frame = 1
Query:   22 HIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQ----FPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTS 699
            H+   NK    Y L LN+FADM++ EF+N Y G K +    F    + +  F Y  V+ +P SVDWRKKGAVT VK+QG CGSCWAFST+ AVEGINQI +  L SLSEQEL+DCDT  N GCNGGLMDYAF++I   GG+  E +YPY                  I G+++VPENDE +LLKA+A+QPVSV I+A G+DFQFYS GVFTG CG ELDHGVA VGYGT+
Sbjct:   67 HVHNANKMDKPYKLKLNKFADMTNHEFRNTYSGSKVKHHRMFRGGPRGNGTFMYEKVDTVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTT 296          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.269e-67
Identity = 127/241 (52.70%), Postives = 160/241 (66.39%), Query Frame = 1
Query:    4 FGTRLKHIDQRNK---EVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF-NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTSKGSDY 714
            F   LK +D  N    E   + LG+N FAD+++EEF+  +LG K      R     + +  VE LP+SVDWR+KGAV PVKNQG CGSCWAFS V+ VE INQ+V+G + +LSEQEL++C T+  N+GCNGGLMD AF +I+ +GG+  E+DYPY                  I G++DVP+NDE+SL KA+AHQPVSV IEA G +FQ Y  GVF+G CG  LDHGV AVGYGT  G DY
Sbjct:   78 FWDNLKFVDAHNARADERGGFRLGMNRFADLTNEEFRATFLGAKVA-ERSRAAGERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVECSTNGQNSGCNGGLMDDAFDFIIKNGGIDTEDDYPYKAVDGKCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEAGGREFQLYHSGVFSGRCGTSLDHGVVAVGYGTDNGKDY 317          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 3.870e-67
Identity = 126/245 (51.43%), Postives = 165/245 (67.35%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEV--TSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVEA------LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTSKGSDY 714
            F   L+ ID  N++    +Y LGL +F D++++E++  YLG + + P RR   A+   +   A      +P++VDWR+KGAV P+K+QG+CGSCWAFST AAVEGIN+IV+G L SLSEQEL+DCD S+N GCNGGLMDYAF++I+ +GGL+ E+DYPY                  I GY+DVP  DE +L KA+++QPVSV IEA G  FQ Y  G+FTG CG  LDH V AVGYG+  G DY
Sbjct:   77 FKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTE-PARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCDKSYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISYQPVSVAIEAGGRIFQHYQSGIFTGSCGTNLDHAVVAVGYGSENGVDY 320          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.278e-66
Identity = 132/244 (54.10%), Postives = 166/244 (68.03%), Query Frame = 1
Query:    4 FGTRLKHIDQRN-KEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQP----SAEFSYRDVEALPK-SVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYG-TSKGSDY 714
            F   +K I + N K+   Y L LN+F DM+++EF++KY G K Q    ++     +  F Y +V +LP  S+DWR KGAVT VK+QG CGSCWAFST+A+VEGINQI +G L SLSEQEL+DCDTS+N GCNGGLMDYAF++I    G+  E+ YPY                  I G+QDVP N+E +L++A+A+QP+SV IEASG  FQFYS GVFTG CG ELDHGVA VGYG T  G+ Y
Sbjct:   63 FKENVKFIHEFNQKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCDTSYNEGCNGGLMDYAFEFI-QKNGITTEDSYPYAEQDGTCASNLLNSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGRCGTELDHGVAIVGYGATRDGTKY 305          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.278e-66
Identity = 127/242 (52.48%), Postives = 159/242 (65.70%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLK----PQFPTRRQPSAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTS-KGSDY 714
            F   + H+   NK    Y L LN+FADM++ EF++ Y G K      F   +  S  F Y  V ++P SVDWRKKGAVT VK+QG CGSCWAFST+ AVEGINQI +  L SLSEQEL+DCD   N GCNGGLM+ AF++I   GG+  E +YPY                  I G+++VP NDE +LLKA+A+QPVSV I+A G+DFQFYS GVFTG C  +L+HGVA VGYGT+  G++Y
Sbjct:   63 FKANVMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHKMFRGSQHGSGTFMYEKVGSVPASVDWRKKGAVTDVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDKEENQGCNGGLMESAFEFIKQKGGITTESNYPYTAQEGTCDESKVNDLAVSIDGHENVPVNDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCNTDLNHGVAIVGYGTTVDGTNY 304          
BLAST of CX290278 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.278e-66
Identity = 129/242 (53.31%), Postives = 160/242 (66.12%), Query Frame = 1
Query:    4 FGTRLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNKYLGLKPQFPT--RRQP--SAEFSYRDVEALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLXXXXXXXXXXXXXXXXXISGYQDVPENDEQSLLKALAHQPVSVGIEASGADFQFYSGGVFTGPCGAELDHGVAAVGYGTS-KGSDY 714
            F   L H+   NK    Y L LN+FADM++ EF++ Y G K   P   R  P  +  F Y  V ++P SVDWRKKGAVT VK+QG CGSCWAFSTV AVEGINQI +  L +LSEQEL+DCD   N GCNGGLM+ AF++I   GG+  E +YPY                  I G+++VP NDE +LLKA+A+QPVSV I+A G+DFQFYS GVFTG C  +L+HGVA VGYGT+  G++Y
Sbjct:   63 FKANLMHVHNTNKMDKPYKLKLNKFADMTNHEFRSTYAGSKVNHPRMFRGTPHENGAFMYEKVVSVPPSVDWRKKGAVTDVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVALSEQELVDCDKEENQGCNGGLMESAFEFIKQKGGITTESNYPYKAQEGTCDASKVNDLAVSIDGHENVPANDEDALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCSTDLNHGVAIVGYGTTVDGTNY 304          
The following BLAST results are available for this feature:
BLAST of CX290278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
XCP1_ARATH1.964e-10373.64Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
XCP2_ARATH3.588e-9772.08Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
RD21A_ARATH5.575e-7453.59Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ1.242e-7356.43Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSEP_RICCO1.088e-6956.96Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
ORYB_ORYSJ2.269e-6752.70Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
GCP1_ARATH3.870e-6751.43Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP_HEMSP4.278e-6654.10Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CYSEP_VIGMU4.278e-6652.48Vignain OS=Vigna mungo PE=1 SV=1[more]
CYSEP_PHAVU4.278e-6653.31Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02022E01SK IF1 Citrus clementina cDNA clone C02022E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290278 ID=CX290278; Name=CX290278; organism=Citrus clementina; type=EST; length=719bp
GAATTCGGCACGAGGTTGAAGCATATTGATCAGAGGAACAAAGAGGTCAC
TAGCTATTGGCTTGGTTTGAATGAGTTTGCAGACATGAGCCACGAAGAGT
TCAAGAACAAATATTTAGGATTGAAACCTCAGTTCCCCACGAGGAGACAG
CCTTCTGCCGAGTTTAGCTATAGAGATGTCGAAGCTTTGCCGAAATCTGT
TGATTGGAGGAAGAAAGGAGCTGTTACTCCTGTCAAGAACCAAGGTTCAT
GTGGTAGTTGTTGGGCATTTTCAACTGTTGCAGCTGTGGAAGGCATCAAC
CAGATAGTCTCAGGAAATCTAACTTCATTGTCCGAACAAGAGTTGATTGA
TTGCGACACAAGTTTCAACAATGGCTGCAATGGAGGTCTAATGGATTATG
CATTCAAATATATAGTTGCAAGTGGAGGACTCCACAAGGAAGAAGACTAC
CCATATCTTATGGAGGAAGGCACTTGTGAGGAAAAGAAGGAAGAGATGGA
GGTAGTGACAATCAGTGGCTACCAAGATGTGCCAGAAAACGATGAACAAA
GTCTCTTGAAAGCACTGGCTCACCAGCCTGTTAGTGTAGGCATCGAGGCT
TCTGGCGCAGACTTCCAATTTTACAGTGGGGGTGTATTCACTGGGCCTTG
TGGAGCTGAGCTCGATCACGGCGTTGCTGCAGTTGGATATGGAACATCAA
AGGGTTCAGATTACATCAT
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