CX290284

Overview
NameCX290284
Unique NameCX290284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX290284 vs. ExPASy Swiss-Prot
Match: ABIL2_ARATH (Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 57/114 (50.00%), Postives = 72/114 (63.16%), Query Frame = 2 
Query:   17 STMPKKDQDKRTVSPHRFPLLRSGSISNRPKTPNAGRPMTPNSSRPTTPNASDAKRRYPSEPRKSYSMRMPAERENCKDFE-QHPXXXXXXXXXXXXXXXXXXDDMLYTYLDEY 355
            ST+PKK+QDKR+VSPHRFPLLRSGS++ R K+ +  RP TP+ SR  TP       RYPSEPR+S S+R+  E++N K+ E Q P                  DD LYT+LDEY
Sbjct:  206 STIPKKEQDKRSVSPHRFPLLRSGSVATR-KSASISRPTTPSKSRSITP------IRYPSEPRRSASVRVAFEKDNQKETEQQQPSKSKRLLKALLSRRKTKKDDTLYTFLDEY 312
[Close]
BLAST of CX290284 vs. ExPASy Swiss-Prot
Match: ABIL3_ARATH (Protein ABIL3 OS=Arabidopsis thaliana GN=ABIL3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 56/115 (48.70%), Postives = 69/115 (60.00%), Query Frame = 2 
Query:   17 STMPKKDQDKRTVSPHRFPLLRSGSISNRPKTPNAGRPMTPNSSRPTTPNASDAKRRYPSEPRKSYSMRMPAERENCK--DFEQHPXXXXXXXXXXXXXXXXXXDDMLYTYLDEY 355
            +T PKK+QDKR VSPHRFPLLRSGS++ RP   +  RP TP+ SR  TP      +RYPSEPR+S S+R+  E+E  K  + +Q P                  DD LYTYLDEY
Sbjct:  213 ATAPKKEQDKRAVSPHRFPLLRSGSVAIRPS--SISRPTTPSKSRAVTP----TPKRYPSEPRRSASVRVAFEKEAQKEPEHQQQPSKSKRLLKALLSRRKTKKDDTLYTYLDEY 321
The following BLAST results are available for this feature:
BLAST of CX290284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ABIL2_ARATH3.551e-2150.00Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=... [more]
ABIL3_ARATH1.349e-2048.70Protein ABIL3 OS=Arabidopsis thaliana GN=ABIL3 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC02022E08SK IF1 Citrus clementina cDNA clone C02022E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290284 ID=CX290284; Name=CX290284; organism=Citrus clementina; type=EST; length=653bp
GAATTCGGCACGAGGATCAACCATGCCCAAAAAAGATCAAGATAAGCGTA
CAGTGTCACCACACCGGTTTCCACTTTTGCGTTCTGGTTCAATCTCAAAT
AGGCCGAAAACCCCAAATGCTGGAAGGCCAATGACCCCAAATTCAAGTAG
ACCAACAACTCCAAATGCTTCTGATGCAAAACGACGGTACCCTTCGGAGC
CTCGAAAATCATATTCTATGCGTATGCCTGCTGAAAGGGAAAACTGTAAA
GACTTTGAACAACACCCCAGCAAAAGTAAACGGCTCCTTAAGGCATTACT
TAGTAGGCGCAAATCAAAGAAAGATGACATGCTATATACTTATCTGGATG
AATACTGATGAAATACATATACTGCTTGCAAAGAAAAGGCAAGCAACCAG
GGAAAGACATCCTGTACGGGAAAGGACTGTGAGATTGCACTCTGTTTGCC
CTTTGTTTGAATGATTTTTTTCCCCCCTTTATATAGTTTTAATGTATTAC
TAGAAGTAGACGGACATCATCTTTTATTATCTTTTTCAGTCATCAATTAC
TTGTAATATTGTGTGCAAATGTTGATGCTTCCTATCAATGTATCCTGGTC
ATGTTGCAGAAAATGTCATGCATCACCTTTGCTTGAAAAAAAAAAAAAAA
AAA
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