CX290303

Overview
NameCX290303
Unique NameCX290303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length146
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_RAT (Structural maintenance of chromosomes protein 3 OS=Rattus norvegicus GN=Smc3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.924e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 GETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            GE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R
Sbjct: 1107 GEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHR 1154          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_PONAB (Structural maintenance of chromosomes protein 3 OS=Pongo abelii GN=SMC3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.924e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 GETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            GE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R
Sbjct: 1107 GEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHR 1154          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_MOUSE (Structural maintenance of chromosomes protein 3 OS=Mus musculus GN=Smc3 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.924e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 GETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            GE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R
Sbjct: 1107 GEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHR 1154          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_HUMAN (Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.924e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 GETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            GE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R
Sbjct: 1107 GEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHR 1154          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_BOVIN (Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.924e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 GETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            GE + M+QLSGGQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R
Sbjct: 1108 GEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHR 1155          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_DICDI (Structural maintenance of chromosome protein 3 OS=Dictyostelium discoideum GN=smc3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.666e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    4 ETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            E  SM+QLSGGQKT+VAL LIFA+QR DPAPFYL DEIDAALD  YR
Sbjct: 1091 EPCSMRQLSGGQKTLVALALIFALQRTDPAPFYLLDEIDAALDHNYR 1137          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SUDA_EMENI (Chromosome segregation protein sudA OS=Emericella nidulans GN=sudA PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.153e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    4 ETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            + Q ++QLSGGQK++ AL L+FAIQ CDPAPFYLFDEIDA LD QYR
Sbjct: 1106 DQQRIQQLSGGQKSLCALALVFAIQACDPAPFYLFDEIDANLDAQYR 1152          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_XENLA (Structural maintenance of chromosomes protein 3 (Fragment) OS=Xenopus laevis GN=smc3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.153e-13
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    4 ETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            E + M+QLS GQK++VAL LIFAIQ+CDPAPFYLFDEID ALD Q+R
Sbjct:  125 EMREMQQLSRGQKSLVALRLIFAIQKCDPAPFYLFDEIDQALDAQHR 171          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_SCHPO (Structural maintenance of chromosomes protein 3 OS=Schizosaccharomyces pombe GN=psm3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.927e-12
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 ETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            E  ++ QLSGGQK++ ALTLIFAIQRCDPAPF + DE DA LD QYR
Sbjct: 1090 EQLNINQLSGGQKSLCALTLIFAIQRCDPAPFNILDECDANLDAQYR 1136          
BLAST of CX290303 vs. ExPASy Swiss-Prot
Match: SMC3_YEAST (Structural maintenance of chromosomes protein 3 OS=Saccharomyces cerevisiae GN=SMC3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.543e-11
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    4 ETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYR 144
            E   ++QLSGGQKTV A+ LI AIQ  DPA FYLFDEIDAALD QYR
Sbjct: 1119 EQLHVEQLSGGQKTVCAIALILAIQMVDPASFYLFDEIDAALDKQYR 1165          
The following BLAST results are available for this feature:
BLAST of CX290303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SMC3_RAT3.924e-1577.08Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_PONAB3.924e-1577.08Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_MOUSE3.924e-1577.08Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_HUMAN3.924e-1577.08Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_BOVIN3.924e-1577.08Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_DICDI9.666e-1478.72Structural maintenance of chromosome protein 3 OS=... [more]
SUDA_EMENI2.153e-1372.34Chromosome segregation protein sudA OS=Emericella ... [more]
SMC3_XENLA2.153e-1374.47Structural maintenance of chromosomes protein 3 (F... [more]
SMC3_SCHPO6.927e-1270.21Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_YEAST1.543e-1172.34Structural maintenance of chromosomes protein 3 OS... [more]
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Properties
Property NameValue
Genbank descriptionC02022G03SK IF1 Citrus clementina cDNA clone C02022G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290303 ID=CX290303; Name=CX290303; organism=Citrus clementina; type=EST; length=146bp
GGGGAGACACAGTCAATGAAGCAGTTATCTGGAGGTCAGAAAACTGTCGT
GGCCCTGACGCTTATTTTTGCAATACAGCGATGTGATCCTGCACCATTTT
ATCTGTTTGATGAAATTGATGCAGCACTGGATCCTCAGTATCGAAC
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