CX290308

Overview
NameCX290308
Unique NameCX290308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7550 contig Ccv1_Contig7550:658..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX290308 vs. ExPASy Swiss-Prot
Match: IN37_SPIOL (37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.846e-100
Identity = 166/189 (87.83%), Postives = 180/189 (95.24%), Query Frame = 2 
Query:    2 KAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADMWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKPVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 568
            KAK K+PLKEC IIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPVYPTFWLSRFFAD+WMLFPKEEEYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPK EDVQKPV+P VF  RF+LGA+A+TY+VLVPIYMW+KD+I PKG P+
Sbjct:  156 KAKAKKPLKECRIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKVEDVQKPVHPLVFLYRFLLGALASTYYVLVPIYMWIKDKIFPKGMPL 344
The following BLAST results are available for this feature:
BLAST of CX290308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IN37_SPIOL2.846e-10087.8337 kDa inner envelope membrane protein, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionC02022G08SK IF1 Citrus clementina cDNA clone C02022G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290308 ID=CX290308; Name=CX290308; organism=Citrus clementina; type=EST; length=747bp
CAAGGCTAAGCAGAAGGAACCCTTGAAGGAATGCACCATAATTGAAGGCG
ACGCCGAGGATCTTCCCTTCCCTACTGATTATGCAGATCGATATGTGTCT
GCTGGGAGTATTGAGTACTGGCCGGACCCACAGCGTGGCATCAAAGAAGC
ATACAGGGTGCTGAAAATTGGAGGGAAAGCTTGTGTTATAGGCCCTGTGT
ACCCAACCTTCTGGCTATCTCGCTTTTTTGCGGATATGTGGATGCTTTTT
CCAAAGGAGGAAGAGTATATTGAATGGTTTCAGAAAGCTGGTTTTAAAGA
TGTTAAACTGAAAAGGATTGGCCCAAAATGGTACCGAGGAGTCCGTCGGC
ATGGCTTGATCATGGGTTGCTCTGTGACGGGTGTAAAGCCTTTATCAGGA
GACTCTCCCCTGCAGCTTGGTCCAAAGGCAGAGGATGTACAGAAGCCCGT
GAATCCTTTTGTGTTTGCCTTGCGGTTTATACTTGGTGCCATTGCAGCAA
CTTACTTTGTGCTGGTTCCCATCTACATGTGGCTCAAAGATCAAATTGTT
CCAAAGGGTCAGCCTATATGAAATATAGAAATATTTTGAGTGGCTGCTGC
AGATAATAAAGCTGATTCATGTGCCTTTCCGTTTTTGTTGCTCAACATGA
CAACATCCTTCTTTTTGGAGCAAGTCAGATGGCACATCTCACCCGTTCAG
CTGGACGGCTTCTGTGGTGGAATATTTCTAATTTTAAGTGCCTTGAT
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