CX290336

Overview
NameCX290336
Unique NameCX290336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig322 contig Ccv1_Contig322:102..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290336 vs. ExPASy Swiss-Prot
Match: GPAT6_ARATH (Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 7.338e-89
Identity = 160/182 (87.91%), Postives = 174/182 (95.60%), Query Frame = 2
Query:   17 RTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVP 562
            RTVLDPVVTAVALGRKISCVTYSISKF+E+ISPIKAVAL+R+REKDAA+IK+LLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQ++F+GTT RG+KLLDPY+ FMNPRPTYEITFL Q+P ELT KGGKS IEVANYIQRVL GTLGFECTN TRKDKY++LAGTDGRVP
Sbjct:  314 RTVLDPVVTAVALGRKISCVTYSISKFSELISPIKAVALTRQREKDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSMFNGTTTRGYKLLDPYFAFMNPRPTYEITFLKQIPAELTCKGGKSPIEVANYIQRVLGGTLGFECTNFTRKDKYAMLAGTDGRVP 495          
BLAST of CX290336 vs. ExPASy Swiss-Prot
Match: GPAT4_ARATH (Glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=GPAT4 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.012e-71
Identity = 127/184 (69.02%), Postives = 157/184 (85.33%), Query Frame = 2
Query:   17 RTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVK-GGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPS 565
            RT LDP++ A+ALGRKI+CVTYS+S+ + ++SPI AVAL+R+R  DAA ++QLLE+GDLVICPEGTTCREP+LLRFSALFAEL+DRIVPVA+N KQ +F+GTTVRG K  DPY+ FMNPRP+YE TFL++LP E+TV  GGK+  EVANY+Q+V+ G LGFECT LTRKDKY +L G DG+V S
Sbjct:  312 RTALDPIIIAIALGRKITCVTYSVSRLSLMLSPIPAVALTRDRVADAARMRQLLEKGDLVICPEGTTCREPYLLRFSALFAELSDRIVPVAMNCKQGMFNGTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVNGGGKTPFEVANYVQKVIGGVLGFECTELTRKDKYLLLGGNDGKVES 495          
BLAST of CX290336 vs. ExPASy Swiss-Prot
Match: GPAT8_ARATH (Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana GN=GPAT8 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.899e-69
Identity = 125/184 (67.93%), Postives = 156/184 (84.78%), Query Frame = 2
Query:   17 RTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVK-GGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPS 565
            RT LDP++ A+ALGRKI CVTYS+S+ + ++SPI AVAL+R+R  DAA++++LLE+GDLVICPEGTTCRE +LLRFSALFAEL+DRIVPVA+N KQ +F+GTTVRG K  DPY+ FMNPRP+YE TFL++LP E+TV  GGK+ IEVANY+Q+V+   LGFECT LTRKDKY +L G DG+V S
Sbjct:  311 RTALDPIIVAIALGRKICCVTYSVSRLSLMLSPIPAVALTRDRATDAANMRKLLEKGDLVICPEGTTCREEYLLRFSALFAELSDRIVPVAMNCKQGMFNGTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVNGGGKTPIEVANYVQKVIGAVLGFECTELTRKDKYLLLGGNDGKVES 494          
BLAST of CX290336 vs. ExPASy Swiss-Prot
Match: GPAT5_ARATH (Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.141e-68
Identity = 127/183 (69.40%), Postives = 144/183 (78.69%), Query Frame = 2
Query:   11 TRRTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 559
            T RT++DPVV +  LGR I  VTYSIS+ +EI+SPI  V L+R R+ DAA IKQ L +GDLV+CPEGTTCREPFLLRFSALFAELTDRIVPVA+N +   FH TT RG K LDP + FMNPRP YEITFLNQLP E T   GKS  +VANY+QR+LA TLGFECTN TRKDKY +LAG DG V
Sbjct:  299 THRTLMDPVVLSYVLGRSIPAVTYSISRLSEILSPIPTVRLTRIRDVDAAKIKQQLSKGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRPVYEITFLNQLPMEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTV 481          
BLAST of CX290336 vs. ExPASy Swiss-Prot
Match: GPAT7_ARATH (Glycerol-3-phosphate acyltransferase 7 OS=Arabidopsis thaliana GN=GPAT7 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.105e-63
Identity = 120/183 (65.57%), Postives = 138/183 (75.41%), Query Frame = 2
Query:   11 TRRTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 559
            T RT++DPVV +  LGR I  VTYSIS+ +EI+SPI    L+R R+ DA  IK+ L  GDLV+ PEGTTCREPFLLRFSALFAELTD IVPVA+N +   FH TT RG K LDP + FMNPRP YE+TFLNQL  E T   GKS  +VANY+QR+LA TLGFECTN TRKDKY +LAG DG V
Sbjct:  297 THRTLMDPVVLSYVLGRSIPAVTYSISRLSEILSPIPTFRLTRIRDVDAEMIKKELSNGDLVVYPEGTTCREPFLLRFSALFAELTDNIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRPVYEVTFLNQLEVEATCSSGKSPYDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTV 479          
BLAST of CX290336 vs. ExPASy Swiss-Prot
Match: GPAT1_ARATH (Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana GN=GPAT1 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.059e-59
Identity = 107/181 (59.12%), Postives = 141/181 (77.90%), Query Frame = 2
Query:   17 RTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLPPELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 559
            RT+LDPV    +LG+ ++ VTYS+SKF+E I+P+K V+L R+R+KD   +++LL +GDLV+CPEGTTCREP+LLRFS LFAELT+ IVPVA++ + ++F+GTT  G K LDP +  MNPRP Y +  L +LP E+T  GGKS+ EVAN+IQ  LA  LGFECTNLTR+DKY +LAG +G V
Sbjct:  404 RTLLDPVFLTTSLGKPLTAVTYSLSKFSEFIAPLKTVSLKRDRKKDGEAMQRLLSKGDLVVCPEGTTCREPYLLRFSPLFAELTEDIVPVAVDARVSMFYGTTASGLKCLDPIFFLMNPRPVYCLEILKKLPKEMTCAGGKSSFEVANFIQGELARVLGFECTNLTRRDKYLVLAGNEGIV 584          
BLAST of CX290336 vs. ExPASy Swiss-Prot
Match: GPAT2_ARATH (Probable glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=GPAT2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.320e-47
Identity = 96/188 (51.06%), Postives = 132/188 (70.21%), Query Frame = 2
Query:   17 RTVLDPVVTAVALGRK-ISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQL--PPELTVKG----GKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 559
            RT+LDP+  + AL +K +  VTYS+S+ +E+++PIK V L+R+R KD   +++LL +GDLV+CPEGTTCREP+LLRFS LF+E+ D IVPVAI++  T F+GTT  G K  DP +  +NP P+Y +  L+ +      T +G    GK   EVAN++Q  +   LGFECTNLTR+DKY ILAG +G V
Sbjct:  340 RTLLDPLYISYALRKKNMKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQAMEKLLSQGDLVVCPEGTTCREPYLLRFSPLFSEVCDVIVPVAIDSHVTFFYGTTASGLKAFDPIFFLLNPFPSYTVKLLDPVSGSSSSTCRGVPDNGKVNFEVANHVQHEIGNALGFECTNLTRRDKYLILAGNNGVV 527          
BLAST of CX290336 vs. ExPASy Swiss-Prot
Match: GPAT3_ARATH (Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=GPAT3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.022e-46
Identity = 98/183 (53.55%), Postives = 126/183 (68.85%), Query Frame = 2
Query:   17 RTVLDPVVTAVALGRK-ISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQTVFHGTTVRGHKLLDPYYVFMNPRPTYEITFLNQLP-PELTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRV 559
            RT+LDP+  A AL +K I  VTYS+S+ +EI++PIK V L+R+R  D   +++LL EGDLV+CPEGTTCREP+LLRFS LF E++D IVPVA+    T F+GTT  G K LDP +  ++P PTY I FL+ +         GK   EVAN +Q  +   L FECT+LTRKDKY ILAG +G V
Sbjct:  335 RTLLDPLYVAFALRKKNIKTVTYSLSRVSEILAPIKTVRLTRDRVSDGQAMEKLLTEGDLVVCPEGTTCREPYLLRFSPLFTEVSDVIVPVAVTVHVTFFYGTTASGLKALDPLFFLLDPYPTYTIQFLDPVSGATCQDPDGKLKFEVANNVQSDIGKALDFECTSLTRKDKYLILAGNNGVV 517          
The following BLAST results are available for this feature:
BLAST of CX290336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GPAT6_ARATH7.338e-8987.91Glycerol-3-phosphate acyltransferase 6 OS=Arabidop... [more]
GPAT4_ARATH9.012e-7169.02Glycerol-3-phosphate acyltransferase 4 OS=Arabidop... [more]
GPAT8_ARATH2.899e-6967.93Probable glycerol-3-phosphate acyltransferase 8 OS... [more]
GPAT5_ARATH7.141e-6869.40Glycerol-3-phosphate acyltransferase 5 OS=Arabidop... [more]
GPAT7_ARATH3.105e-6365.57Glycerol-3-phosphate acyltransferase 7 OS=Arabidop... [more]
GPAT1_ARATH6.059e-5959.12Glycerol-3-phosphate acyltransferase 1 OS=Arabidop... [more]
GPAT2_ARATH5.320e-4751.06Probable glycerol-3-phosphate acyltransferase 2 OS... [more]
GPAT3_ARATH2.022e-4653.55Probable glycerol-3-phosphate acyltransferase 3 OS... [more]
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Properties
Property NameValue
Genbank descriptionC02023B02SK IF1 Citrus clementina cDNA clone C02023B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290336 ID=CX290336; Name=CX290336; organism=Citrus clementina; type=EST; length=682bp
GGAATTCGGCACGAGGCGCACTGTTTTAGACCCTGTGGTCACAGCCGTTG
CCCTAGGACGAAAAATTAGTTGTGTCACATATAGTATTAGCAAGTTCACT
GAAATAATTTCACCCATTAAAGCTGTTGCCTTGTCAAGGGAAAGAGAGAA
AGATGCAGCTCACATCAAGCAATTGCTTGAAGAAGGTGACTTGGTGATCT
GCCCCGAGGGAACAACCTGCAGGGAGCCTTTTCTTTTACGATTCAGTGCA
CTTTTTGCTGAGCTTACAGATAGAATTGTGCCGGTTGCTATCAACACTAA
GCAAACTGTGTTTCATGGTACCACAGTACGTGGGCACAAATTGTTGGATC
CTTACTATGTGTTCATGAATCCAAGGCCAACTTATGAGATCACATTCTTG
AATCAGCTGCCGCCGGAGCTGACAGTGAAAGGCGGCAAATCAGCCATCGA
AGTTGCTAATTACATTCAAAGGGTGCTTGCTGGTACATTAGGGTTTGAGT
GCACCAATTTGACGAGGAAAGATAAGTACTCCATTCTCGCAGGTACTGAT
GGCCGCGTTCCATCGAAGAAGGAAAAGGAAAAGGAAAAGGAAAAGGCTTA
AGATTCAAGAGATGGAAGATTGAAACGGAAAAGCTTATGATTAATTTAAG
CTCTATTGTTTTTCATATGTTTTAAACTTTAT
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