CX290341

Overview
NameCX290341
Unique NameCX290341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig201 contig Ccv1_Contig201:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX290341 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.404e-33
Identity = 77/201 (38.31%), Postives = 110/201 (54.73%), Query Frame = 1 
Query:  127 RPSANAKQSDLWLPLANQGWR-SCAQSANNPSLPQKSQGYIQVFLDGGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQDSSSFMDIYDVDHFINVLKDDISIVKELPNEFSWSTREYYXXXXXXXXXXXXPVHASANWYLENVLPVLQSYGVAAISPFSHRLTFDNLPMDIQRLRCKANFQALIFVPHIRALGDALV 726
            RPS      +LW    + GWR S A  ++ P   +++ GY++V  +GGLNQQR  IC+AV   +I+NATLV+P L+ N  W D S F  IYDV+HFI  LK D+ IV ++P+       +              P  A   WYL   L  ++ +    ++PFSHRL  +    + QRLRC+ N+ AL F PHI  L +++V
Sbjct:   53 RPS-KINVEELWESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD-----VHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIV 247
The following BLAST results are available for this feature:
BLAST of CX290341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH8.404e-3338.31DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC02023B08SK IF1 Citrus clementina cDNA clone C02023B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290341 ID=CX290341; Name=CX290341; organism=Citrus clementina; type=EST; length=731bp
ATGTTCTCGGAATGGAATGGTCCAAAACCTAGGCACCTGCCTCTGCTCAA
GAGTGCTTTGCAACACCAGAAAGAACCAAATGCTCCTAAGCCTAGGCACT
TACCTCTGTTCAAGAGTGCTTTACAGCGCCCAAGTGCAAATGCCAAGCAG
TCTGATCTCTGGCTACCTTTGGCCAACCAAGGATGGAGATCATGTGCTCA
ATCTGCAAATAATCCTTCATTACCTCAGAAATCTCAAGGATACATTCAGG
TATTTCTTGATGGAGGGTTAAACCAGCAGAGAATGGGGATATGTGATGCA
GTTGCTGTTACAAAAATTCTGAATGCAACACTTGTGATCCCATATCTTGA
AGTAAATCCTGTTTGGCAGGATTCAAGTTCCTTCATGGATATATATGATG
TCGATCACTTTATTAATGTATTAAAAGATGATATTTCTATTGTCAAAGAA
CTTCCTAATGAGTTTTCTTGGAGCACAAGGGAGTATTATGCCACTGCTAT
TCGTGCCACCAGAATCAAGACAGCACCAGTTCATGCTTCAGCTAACTGGT
ACCTAGAGAATGTCTTGCCTGTACTCCAGAGTTATGGGGTTGCTGCAATT
TCCCCATTCTCTCACCGTCTGACGTTTGACAACTTGCCGATGGACATTCA
ACGATTACGTTGTAAAGCAAACTTCCAAGCATTGATTTTTGTACCTCATA
TCAGAGCACTTGGAGATGCCCTTGTCAGTCG
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