CX290349

Overview
NameCX290349
Unique NameCX290349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig825 contig Ccv1_Contig825:143..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.038e-42
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 2
Query:  131 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 460
            AEEGQVI CHTVE+WNEQLQKG   K LIVVDFTASWC PC+ ++P L+ELAKKLP V FLKVDVDELK+VA EWAVE+MPTF+  KEGK++ ++VGAKKDELQ  + KH
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.942e-41
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2
Query:  128 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 460
            MAEEGQVI  HTV++WNE LQKGI  KKLIVVDFTASWC PCK ++   +ELAKK+P V FLKVDVDELKSVA +WAVEAMPTF+  KEGK++ ++VGAKKDELQ  + KH
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.554e-41
Identity = 74/110 (67.27%), Postives = 93/110 (84.55%), Query Frame = 2
Query:  131 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 460
            +EEGQVI+CHTVE+WNEQLQK   +K L+VVDFTASWC PC+ ++P  ++LAKKLP V+FLKVD DELKSVA +WA++AMPTF+  KEGK+L ++VGAKKDELQ  + KH
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.549e-40
Identity = 73/111 (65.77%), Postives = 92/111 (82.88%), Query Frame = 2
Query:  131 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 463
            +EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC+ ++PIL+++AKK+P VIFLKVDVDELK+V+ EW+VEAMPTFV  K+GK + R+VGAKK+ELQ  + KHA
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA 119          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.182e-36
Identity = 71/114 (62.28%), Postives = 91/114 (79.82%), Query Frame = 2
Query:  128 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 469
            MAEE QVI+CHTV+ WNE+ QK   + KLIV+DFTASWC PC++++P +SELAKK P V F KVDVD+LK VAEE+ VEAMP+FV+ KEG+ ++RIVGA+KDEL   +  HA +
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVHAPI 114          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.115e-35
Identity = 64/111 (57.66%), Postives = 89/111 (80.18%), Query Frame = 2
Query:  128 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 460
            MA EG+VI+CHT+E WNE+++    +KKLIV+DFTASWCPPC+ ++P+ +E+AKK   V+F K+DVDEL++VA+E+ VEAMPTFV  KEG ++ R+VGA KDE+   + KH
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.564e-34
Identity = 65/114 (57.02%), Postives = 90/114 (78.95%), Query Frame = 2
Query:  128 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 469
            MA EG+VI+CHTVE W E+L+    +KKLIV+DFTA+WCPPC+ ++P+ ++LAKK   V+F KVDVDEL +VAEE+ V+AMPTF+  KEG++ + +VGA K+E+   +EKH TV
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTV 114          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.729e-33
Identity = 65/108 (60.19%), Postives = 86/108 (79.63%), Query Frame = 2
Query:  140 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 463
            G+VIS H++E W  Q+++  AAKKL+V+DFTASWC PC++M+PI ++LAKK PA +FLKVDVDELK +AE+++VEAMPTF+  KEG V  R+VGA K+EL   V  HA
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHA 125          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.258e-33
Identity = 67/114 (58.77%), Postives = 88/114 (77.19%), Query Frame = 2
Query:  131 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 469
            AEEGQVI CHT + W  QL K   + KLIV+DFTASWCPPC++++PI ++LAKK + + IF KVDVDEL+SVA+E+ VEAMPTFV  K G+V+ ++VGA K++LQ  + KH  V
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGV 116          
BLAST of CX290349 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.580e-33
Identity = 63/114 (55.26%), Postives = 88/114 (77.19%), Query Frame = 2
Query:  131 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 469
            AEEGQVI CH ++ W  QL     + KLIV+DFTASWCPPC++++P+ ++LAKK + + IF KVDVDEL++VA+E+ VEAMPTFVL K+G V+ ++VGA+K++L   + KH  V
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGV 116          
The following BLAST results are available for this feature:
BLAST of CX290349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
TRXH_RICCO2.038e-4272.73Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC2.942e-4171.17Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH6.554e-4167.27Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC5.549e-4065.77Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES2.182e-3662.28Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH4.115e-3557.66Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH1.564e-3457.02Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT1.729e-3360.19Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH4_ARATH2.258e-3358.77Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA8.580e-3355.26Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02023C06SK IF1 Citrus clementina cDNA clone C02023C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290349 ID=CX290349; Name=CX290349; organism=Citrus clementina; type=EST; length=637bp
AATTCGGCACGAGGGGCTGCTCGCTATTTATAGAGATCCAAGATTGCAAG
AGTTCCGTCACCAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAA
GTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGAT
CAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTG
CGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCA
TGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGC
TGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCTGTCGCTGAGG
AATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAA
GTCCTGCAGAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGT
CGAAAAGCACGCAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGA
TGCGTACATGAATCTCACTGGTCTTTTATTGTAAGATGTGTGTTTGTGGT
TGCTTAATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATATGAA
TAAATGACAATCTTCTACCAAAAAAAAAAAAAAAAAA
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