CX290352

Overview
NameCX290352
Unique NameCX290352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290352_ssr473 microsatellite CX290352_ssr473:473..482. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9364 contig Ccv1_Contig9364:132..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA4_NICPL (Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.168e-100
Identity = 177/228 (77.63%), Postives = 197/228 (86.40%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQ 698
            G Y A+MTVVFFW M  TDFFSD FGV+SLR   +EMM+ALYLQVSIISQALIFVTRSRSWSF+ERPG+LL  AF+IAQLVAT IAVYANW+FAR++GCGWGWAGVIWLYS++ Y PLDI+KF IRYILSGKAW+ LL+NKTAFTTKKDYGK            TLHGLQPPE   +F++KNSYRELSEIAEQAKRRAE+ARLRELHTLKGHVESVVKLKGLDI+TIQ
Sbjct:  720 GGYQALMTVVFFWAMHDTDFFSDKFGVKSLRNSDEEMMSALYLQVSIISQALIFVTRSRSWSFLERPGMLLVIAFMIAQLVATLIAVYANWAFARVKGCGWGWAGVIWLYSIIFYLPLDIMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPEATNLFNEKNSYRELSEIAEQAKRRAEMARLRELHTLKGHVESVVKLKGLDIETIQ 947          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA1_ORYSJ (Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 5.797e-100
Identity = 179/230 (77.83%), Postives = 200/230 (86.96%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPE--TNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQ 698
            GSYLA+MTV+FFW M KTDFF+D FGVRS+R    EMM+ALYLQVSI+SQALIFVTRSRSWSFIERPGLLL TAF++AQLVATF+AVYANW FARI+G GWGWAGVIWLYS+V YFPLDI KF IR++LSG+AWD LLENK AFTTKKDYG+            TLHGLQPPE  +N +F+DK+SYRELSEIAEQAKRRAE+ARLREL+TLKGHVESVVKLKGLDIDTIQ
Sbjct:  717 GSYLALMTVIFFWAMHKTDFFTDKFGVRSIRNSEHEMMSALYLQVSIVSQALIFVTRSRSWSFIERPGLLLVTAFMLAQLVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIRFVLSGRAWDNLLENKIAFTTKKDYGREEREAQWATAQRTLHGLQPPEVASNTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQ 946          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA5_ARATH (ATPase 5, plasma membrane-type OS=Arabidopsis thaliana GN=AHA5 PE=2 SV=3)

HSP 1 Score: 359.377 bits (921), Expect = 1.093e-98
Identity = 179/228 (78.51%), Postives = 195/228 (85.53%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQ 698
            G Y A+MTVVFFW+M+ +DFFS+ FGVR L  RP++MMAALYLQVSIISQALIFVTRSRSWS+ E PGLLL  AFVIAQLVATFIAVYANWSFARIEG GWGWAGVIWLYS +TY PLD+LKFGIRY+LSGKAW  LLENKTAFTTKKDYGK            TLHGLQP E N IF++KNSY ELS+IAEQAKRRAEV RLRE++TLKGHVESVVKLKGLDIDTIQ
Sbjct:  717 GGYQALMTVVFFWVMKDSDFFSNYFGVRPLSQRPEQMMAALYLQVSIISQALIFVTRSRSWSYAECPGLLLLGAFVIAQLVATFIAVYANWSFARIEGAGWGWAGVIWLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAEKNNIFNEKNSYSELSQIAEQAKRRAEVVRLREINTLKGHVESVVKLKGLDIDTIQ 944          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA2_ARATH (ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 2.520e-95
Identity = 172/229 (75.11%), Postives = 185/229 (80.79%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQH 701
            G Y AIMTV+FFW   KTDFFSD FGVRS+R    E+M A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AF+IAQL+AT IAVYANW FA+I G GWGWAGVIWLYS+VTYFPLD+ KF IRYILSGKAW  L ENKTAFT KKDYGK            TLHGLQP E   IF +K SYRELSEIAEQAKRRAE+ARLRELHTLKGHVESVVKLKGLDI+T  H
Sbjct:  717 GGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWALAQRTLHGLQPKEAVNIFPEKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVVKLKGLDIETPSH 945          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA1_ARATH (ATPase 1, plasma membrane-type OS=Arabidopsis thaliana GN=AHA1 PE=1 SV=3)

HSP 1 Score: 345.51 bits (885), Expect = 1.634e-94
Identity = 170/229 (74.24%), Postives = 188/229 (82.10%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQH 701
            G Y AIM+V+FFW   KTDFFSD FGVRS+R   DE+M A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYA+W+FA+++G GWGWAGVIW+YS+VTYFP DILKF IRYILSGKAW +L +N+TAFTTKKDYG             TLHGLQP E   IF +K SYRELSEIAEQAKRRAE+ARLRELHTLKGHVESV KLKGLDIDT  H
Sbjct:  717 GGYQAIMSVIFFWAAHKTDFFSDKFGVRSIRDNNDELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFVIAQLVATLIAVYADWTFAKVKGIGWGWAGVIWIYSIVTYFPQDILKFAIRYILSGKAWASLFDNRTAFTTKKDYGIGEREAQWAQAQRTLHGLQPKEDVNIFPEKGSYRELSEIAEQAKRRAEIARLRELHTLKGHVESVAKLKGLDIDTAGH 945          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA1_WHEAT (Plasma membrane ATPase OS=Triticum aestivum GN=ha1 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 8.964e-93
Identity = 167/229 (72.93%), Postives = 196/229 (85.59%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPE--TNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTI 695
            G+YLA++TVVFFWL+ KTDFF++ FGV S+R    + M+ALYLQVSI+SQALIFVTRSRSWSF+ERPG LL TAF++AQLVAT IAVYANW FARI+G GWGWAGVIWL+S+V YFPLDI KF IR++LSG+AWD LL+NKTAFTTK++YGK            TLHGLQ PE  ++ +F+DK+SYRELSEIAEQAKRRAE+ARLREL+TLKGHVESVVKLKGLDIDTI
Sbjct:  717 GTYLALVTVVFFWLIHKTDFFTNKFGVESIRNTEFKEMSALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVTAFLLAQLVATLIAVYANWDFARIKGIGWGWAGVIWLFSIVFYFPLDIFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTI 945          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA9_ARATH (ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 2.208e-91
Identity = 163/228 (71.49%), Postives = 188/228 (82.46%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQ 698
            G+YLA+MTVVFFW    TDFFS  FGVRS+   P E+ AA+YLQVSI+SQALIFVTRSRSWS++ERPG  L +AF +AQL+AT IAVYANW+FARI G GWGWAGVIWLYS+V Y PLDILKF IRY LSG+AWD ++ENKTAFT+KKDYGK            TLHGLQP +T+ +F+DK++YRELSEIA+QAKRRAEVARLRE HTLKGHVESVVK KGLDI+ IQ
Sbjct:  722 GTYLAVMTVVFFWAAESTDFFSAKFGVRSISGNPHELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGFWLISAFFMAQLIATLIAVYANWNFARIRGIGWGWAGVIWLYSIVFYIPLDILKFIIRYSLSGRAWDNVIENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTSDMFNDKSTYRELSEIADQAKRRAEVARLRERHTLKGHVESVVKQKGLDIEAIQ 949          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA8_ARATH (ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.390e-91
Identity = 168/228 (73.68%), Postives = 186/228 (81.58%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQ 698
            G+Y+A+ TV+FFWL   TDFFS  FGVRS++   +E+MAALYLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYANW FARI GCGWGWAG IW+YS++TY PLDILKF IRY L+GKAWD ++  KTAFTTKKDYGK            TLHGL PPE   +F+D  +  ELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQ
Sbjct:  720 GTYMALTTVLFFWLAHDTDFFSKTFGVRSIQGNEEELMAALYLQVSIISQALIFVTRSRSWSFVERPGFLLLIAFVIAQLVATLIAVYANWGFARIVGCGWGWAGGIWVYSIITYIPLDILKFIIRYALTGKAWDNMINQKTAFTTKKDYGKGEREAQWALAQRTLHGLPPPE--AMFNDNKN--ELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQ 943          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA6_ARATH (ATPase 6, plasma membrane-type OS=Arabidopsis thaliana GN=AHA6 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.188e-90
Identity = 162/230 (70.43%), Postives = 190/230 (82.61%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTI-QH 701
            G+Y+A++TVVFFWL   T FFSD FGVRSL+ + +E++A LYLQVSIISQALIFVTRSRSWSF+ERPGLLL  AF +AQL+AT IA YA+W FARI+GCGWGW GVIW+YS+VTY PLDILKF  RY LSGKAW+ ++EN+TAFTTKKDYG+            TLHGL+PPE+  +F D  +Y ELSEIAEQAK+RAEVARLRE+HTLKGHVESVVKLKGLDID + QH
Sbjct:  719 GTYMALVTVVFFWLAHDTTFFSDKFGVRSLQGKDEELIAVLYLQVSIISQALIFVTRSRSWSFVERPGLLLLIAFFVAQLIATLIATYAHWEFARIKGCGWGWCGVIWIYSIVTYIPLDILKFITRYTLSGKAWNNMIENRTAFTTKKDYGRGEREAQWALAQRTLHGLKPPES--MFEDTATYTELSEIAEQAKKRAEVARLREVHTLKGHVESVVKLKGLDIDNLNQH 946          
BLAST of CX290352 vs. ExPASy Swiss-Prot
Match: PMA3_ARATH (ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 4.764e-86
Identity = 157/229 (68.56%), Postives = 177/229 (77.29%), Query Frame = 3
Query:   15 GSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETNGIFSDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQH 701
            G Y+AIMTVVFFW   KTDFF   F VR LR    EMM+ALYLQVSI+SQALIFVTRSRSWSF ERPG  L  AF +AQL+AT IAVY NW FARI+G GWGWAGVIWLYS+V YFPLDI+KF IRYIL+G AW  +++N+TAFTTK++YG             TLHGLQ  ET  +  ++  YRELSEIA QAKRRAE+ARLRELHTLKGHVESVVKLKGLDI+T  H
Sbjct:  718 GGYMAIMTVVFFWAAYKTDFFPRTFHVRDLRGSEHEMMSALYLQVSIVSQALIFVTRSRSWSFTERPGYFLLIAFWVAQLIATAIAVYGNWEFARIKGIGWGWAGVIWLYSIVFYFPLDIMKFAIRYILAGTAWKNIIDNRTAFTTKQNYGIEEREAQWAHAQRTLHGLQNTETANVVPERGGYRELSEIANQAKRRAEIARLRELHTLKGHVESVVKLKGLDIETAGH 946          
The following BLAST results are available for this feature:
BLAST of CX290352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PMA4_NICPL1.168e-10077.63Plasma membrane ATPase 4 OS=Nicotiana plumbaginifo... [more]
PMA1_ORYSJ5.797e-10077.83Plasma membrane ATPase OS=Oryza sativa subsp. japo... [more]
PMA5_ARATH1.093e-9878.51ATPase 5, plasma membrane-type OS=Arabidopsis thal... [more]
PMA2_ARATH2.520e-9575.11ATPase 2, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_ARATH1.634e-9474.24ATPase 1, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_WHEAT8.964e-9372.93Plasma membrane ATPase OS=Triticum aestivum GN=ha1... [more]
PMA9_ARATH2.208e-9171.49ATPase 9, plasma membrane-type OS=Arabidopsis thal... [more]
PMA8_ARATH8.390e-9173.68ATPase 8, plasma membrane-type OS=Arabidopsis thal... [more]
PMA6_ARATH3.188e-9070.43ATPase 6, plasma membrane-type OS=Arabidopsis thal... [more]
PMA3_ARATH4.764e-8668.56ATPase 3, plasma membrane-type OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC02023C09SK IF1 Citrus clementina cDNA clone C02023C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290352 ID=CX290352; Name=CX290352; organism=Citrus clementina; type=EST; length=707bp
GAATTCGGCACGAGGGAAGTTACTTGGCCATCATGACTGTTGTATTCTTC
TGGTTAATGAGGAAGACTGACTTTTTCTCGGACGCGTTTGGTGTAAGATC
ATTAAGAACTAGACCCGATGAGATGATGGCCGCTTTATACTTGCAAGTCA
GTATTATTAGCCAGGCCCTTATTTTTGTCACGAGGTCCCGCAGCTGGTCC
TTTATTGAACGCCCTGGACTTCTCTTAGCCACGGCATTTGTGATTGCTCA
GCTTGTAGCAACTTTCATAGCGGTCTATGCAAATTGGAGTTTTGCACGGA
TAGAGGGTTGTGGCTGGGGCTGGGCCGGGGTAATCTGGCTTTACAGTCTG
GTAACATATTTTCCTCTTGACATACTCAAGTTCGGAATCCGCTACATCCT
CAGTGGAAAGGCTTGGGATACTCTTCTGGAGAACAAGACTGCCTTCACTA
CCAAGAAAGACTACGGTAAAGAAGAGAGAGAGGCACAATGGGCAGCCGCA
CAAAGGACCTTGCACGGTCTTCAACCACCCGAAACAAACGGCATTTTCTC
TGACAAGAACAGTTACAGGGAGCTTTCAGAGATCGCCGAGCAAGCCAAGA
GACGTGCTGAGGTGGCCAGGCTGAGGGAGTTGCACACGCTGAAAGGGCAT
GTTGAATCGGTGGTGAAGCTGAAAGGACTTGACATTGATACGATCCAACA
CATTATA
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