CX290353

Overview
NameCX290353
Unique NameCX290353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig286 contig Ccv1_Contig286:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP24_ARATH (Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.632e-85
Identity = 159/209 (76.08%), Postives = 175/209 (83.73%), Query Frame = 1
Query:    1 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYNK 627
            DEWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ + V  IEDAL LFSA E+LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQGSTKL K V+FPL+L L R  LV+ S E  +YELVAT+THHG DPSKGHYT DAR  N QWL FDDASVT IGT  VLHDQAYVLFY +
Sbjct:  342 DEWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQWLRFDDASVTPIGTKLVLHDQAYVLFYKQ 550          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBPB_DICDI (Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.373e-37
Identity = 90/210 (42.86%), Postives = 126/210 (60.00%), Query Frame = 1
Query:    1 DEWETVGPKNKSAV-TRTQSFLPSA-LSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADA-RYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 621
            D WE VG K K+A+ T +Q  LP   +S IF G L+S     G+K S TV+PF  LHLDI  E ++++EDAL+ F  PE +EGY T ST     ++A KS   ++L +ILI+H  RF++ S  S KL K +RFP QL L      +     +KY L + V+HHGR  S+GHYT D  +    QW+ +DD++ T +    VL+ +AY+L Y
Sbjct:  243 DNWEVVGKKGKTAIITNSQQELPKTPISQIFSGVLRSSFNRTGSKESITVEPFYCLHLDIRPEEINSLEDALKFFMKPEIIEGY-TCSTKKI-EISASKSWSFESLPRILIVHFKRFAFESDTSKKLDKLIRFPTQLSLS---TASNHQTQKKYSLFSVVSHHGRGLSQGHYTCDIYQPQQAQWIRYDDSTFTEVKEQDVLNREAYLLLY 447          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP10_HUMAN (Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.407e-35
Identity = 85/221 (38.46%), Postives = 126/221 (57.01%), Query Frame = 1
Query:    1 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS-TKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTADARYFN-DQWLHFDDASVTAIGTSKVL----HDQAYVLFYNK 627
            DEWE VGP+NK++VTR   F+ + ++ IFGG ++SVV  Q +K SAT+QPF  L LDI S+ + T++DAL    A E+++GY T +      V   + V ++ L  +L+LHL RF Y   G   KL K++ +P+ L + ++LL +P  +       R Y L A V HHG   + GHYT D      + WL  DD +V  I   +V+       AY+L+Y +
Sbjct:  578 DEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQE---VEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEISKELL-SPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPTAERTAYLLYYRR 794          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP10_MOUSE (Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 85/221 (38.46%), Postives = 125/221 (56.56%), Query Frame = 1
Query:    1 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS-TKLHKSVRFPLQLVLGRDLLVTPSAEG------RKYELVATVTHHGRDPSKGHYTADARYFN-DQWLHFDDASVTAIGTSKVLHD----QAYVLFYNK 627
            DEWE VGPKNK+++TR   F+ + ++ IFGG ++SVV  Q +K SAT+Q F  L LDI S+ + T++DAL    A E+++GY T +      V   + V ++ L  +L+LHL RF Y   G   KL K++ +P+ L + R+LL +P  +       R Y L A V HHG   + GHYT D      + WL  DD +V  I   +V+       AY+L+Y +
Sbjct:  572 DEWEQVGPKNKTSITRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQLFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQE---VEVSRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLVKNIDYPVDLEISRELL-SPGIKNKNFKCQRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPPADRTAYLLYYRR 788          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP3_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 3 OS=Schizosaccharomyces pombe GN=ubp3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.080e-27
Identity = 79/228 (34.65%), Postives = 119/228 (52.19%), Query Frame = 1
Query:    7 WETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLVTPSAEGR---KYELVATVTHHGRDPSKGHYTADARYFNDQ-WLHFDDASVTAI--------------GTSKVLHDQ--AYVLFYNK 627
            W  VG   K  + R+ +   S +S IFGGQL+S ++    + S  ++PF  L LDI +E +H++ DAL   +APE L  + +S     G VTA K + I++L  +LILHL RF Y + G T K +K + +P +L + +++  +PS  G    +Y+L A V HHG   S GHYT D +  +   W   DD  +  +                SK+ H    AY+LFY +
Sbjct:  288 WTEVGKNKKPVIARSATVERSPISQIFGGQLRSTLRVPSARDSVLLEPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWHSSK----GNVTATKQMYIESLPPVLILHLKRFFYEASGGTQKNYKPIAYPARLSIPQNVF-SPSVRGSIHPEYDLNAVVYHHGTSASGGHYTVDVQQLDKSGWFRIDDTHIHRVPIHDVENSELSADPSLSKLGHGDRVAYLLFYTR 510          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP3_YEAST (Ubiquitin carboxyl-terminal hydrolase 3 OS=Saccharomyces cerevisiae GN=UBP3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 72/236 (30.51%), Postives = 112/236 (47.46%), Query Frame = 1
Query:   19 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNK--ASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS---------------TKLHKSVRFPLQLVLGRDLLV-------TPSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHD--------QAYVLFYNK 627
            G K K+A  RT   +PS +S +FGGQ +SV+    NK   S T+ PF  + LDI    V+ +E A + FS  E L     SS+GN   V AKK   I  L ++L++   RFS+ +  +                K+ K +++  +L++  + +        T   + R+Y+L   + HHG     GHYTAD  +  +++W   DD ++T +    VL           AY+L Y K
Sbjct:  679 GKKTKTAAKRTVEIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEYELLP--FKSSSGND--VEAKKQTFIDKLPQVLLIQFKRFSFINNVNKDNAMTNYNAYNGRIEKIRKKIKYGHELIIPEESMSSITLKNNTSGIDDRRYKLTGVIYHHGVSSDGGHYTADVYHSEHNKWYRIDDVNITELEDDDVLKGGEEASDSRTAYILMYQK 910          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP8_HUMAN (Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 65/188 (34.57%), Postives = 95/188 (50.53%), Query Frame = 1
Query:   67 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 621
            S +  +F GQ KS V+    +K S T + F+ L L + S +  T++D LRLFS  E L +  R   +       + K ++I  L  +L++HL RFSY  +   KL  SV FPL+ +     ++ P    +KY L +   H+G     GHYTA  +     +W  FDD  V+ I  S V    AY+LFY
Sbjct:  920 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 1106          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP8_MOUSE (Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 64/188 (34.04%), Postives = 94/188 (50.00%), Query Frame = 1
Query:   67 SALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 621
            S +  +F GQ KS V+     + S T + F+ L L + S +  T++D LRLFS  E L +  R   +       + K ++I  L  +L++HL RFSY  +   KL  SV FPL+ +     ++ P    +KY L +   H+G     GHYTA  +     +W  FDD  V+ I  S V    AY+LFY
Sbjct:  882 SIIVALFQGQFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVRSSAAYILFY 1068          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: U17L5_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 5 OS=Homo sapiens GN=USP17L5 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17
Identity = 70/211 (33.18%), Postives = 103/211 (48.82%), Query Frame = 1
Query:   73 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYNKFRRLQDYKFQWEK--EAISDGFNP 693
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL   + PE L G      G       A K++ + T +K+LIL L RFS       K+ K+V++P  L + +  +  P+     Y L A + H G     GHY +  +    QW   DDA VTA   + VL  QAYVLFY +       K +WE+  E++S G  P
Sbjct:  193 IHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLAKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ-------KSEWERHSESVSRGREP 391          
BLAST of CX290353 vs. ExPASy Swiss-Prot
Match: UBP17_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17A PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 1
Query:   73 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYNKFRRLQDYKFQWEK--EAISDGFNP 693
            +  IFGG  +S +K    +  S T  P+L + LDI  +A  +++ AL     PE L G      G       A K++ + T +K+LIL L RFS       K+ K+V++P  L + +  +  P+     Y L A + H G     GHY +  +    QW   DDA VTA   + VL  QAYVLFY +       K +WE+  E++S G  P
Sbjct:  193 IHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDI--QAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFS--DVTGNKIAKNVQYPECLDM-QPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQ-------KSEWERHSESVSRGREP 391          
The following BLAST results are available for this feature:
BLAST of CX290353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBP24_ARATH5.632e-8576.08Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabid... [more]
UBPB_DICDI4.373e-3742.86Ubiquitin hydrolase B OS=Dictyostelium discoideum ... [more]
UBP10_HUMAN1.407e-3538.46Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo s... [more]
UBP10_MOUSE9.118e-3538.46Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus mu... [more]
UBP3_SCHPO1.080e-2734.65Probable ubiquitin carboxyl-terminal hydrolase 3 O... [more]
UBP3_YEAST5.738e-2130.51Ubiquitin carboxyl-terminal hydrolase 3 OS=Sacchar... [more]
UBP8_HUMAN7.014e-1934.57Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sa... [more]
UBP8_MOUSE2.041e-1834.04Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus mus... [more]
U17L5_HUMAN1.728e-1733.18Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBP17_HUMAN3.849e-1733.18Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC02023C10SK IF1 Citrus clementina cDNA clone C02023C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290353 ID=CX290353; Name=CX290353; organism=Citrus clementina; type=EST; length=736bp
GATGAATGGGAAACAGTTGGCCCAAAGAACAAATCTGCAGTGACAAGAAC
ACAGAGCTTCCTGCCTTCAGCACTTAGTGATATATTTGGAGGACAGCTGA
AAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCTGCAACTGTTCAGCCA
TTTCTCTTGCTCCACCTTGATATTTACTCTGAAGCTGTGCATACAATTGA
GGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATCTTGAGGGATACCGTA
CATCATCTACTGGAAATGCTGGTGTTGTGACTGCCAAAAAATCTGTCAAG
ATACAGACGCTTTCAAAGATTTTGATTTTACACCTGATGCGTTTTAGTTA
TGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTGTCCGTTTTCCTCTTC
AATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCATCTGCTGAGGGTCGA
AAATATGAACTTGTTGCCACAGTTACCCACCATGGAAGAGATCCCTCGAA
GGGGCATTATACTGCTGATGCTCGGTATTTTAATGACCAGTGGCTCCATT
TTGACGATGCCTCTGTGACTGCTATTGGGACAAGTAAGGTATTGCATGAC
CAGGCATACGTCCTTTTCTACAACAAGTTTAGAAGGTTGCAGGATTATAA
GTTTCAATGGGAGAAAGAAGCCATATCTGATGGATTCAACCCATGACAGT
AGCTGAACTGTTTCTTAATTTGCAGTAGTTTTAAAT
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