CX290362

Overview
NameCX290362
Unique NameCX290362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig283 contig Ccv1_Contig283:2..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.708e-43
Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 1
Query:   16 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKI 483
            DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDS + ++ K+
Sbjct:  266 DVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKL 421          
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 1
Query:   16 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKI 483
            DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDS + ++ K+
Sbjct:  266 DVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421          
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 1
Query:   16 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKI 483
            DV  ++S K  L+Y G + +A+K VA A   RSL  FE AL D++A+L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L    VE+KLSQMILDKKF G LDQG G LIIF++P  D  Y A LETI NM KVVDS + ++ K+
Sbjct:  266 DVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421          
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 85/157 (54.14%), Postives = 111/157 (70.70%), Query Frame = 1
Query:   16 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKIM 486
            +V  +++ K  ++Y G +++AM+A+A AH  RSL  FE AL+D+K +L  DPI+  HLSSLYD LLEQNL R++EP+SRVE++HIAELI L    VE KLSQMILDK F G LDQG GCLI++++P+ D  Y A LE I NMG VVD      A  +
Sbjct:  264 EVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASAL 420          
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.941e-41
Identity = 80/159 (50.31%), Postives = 117/159 (73.58%), Query Frame = 1
Query:   10 TRDVAGIISSKAGLQYVGPE-LDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKI 483
            T DV  +++ K GL+Y     ++A+  ++ +H+KRSL +F+   ++F  QL +DPI+H HL+ LY  LLEQNLCR+IEP+SRVEI+HIA+LI+LP+D VE+KLS MILDKK+ G LDQG G LI+FE+ K D ++  +LETI  + +VVD  + ++ K+
Sbjct:  254 TDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVDLLYEKTNKL 412          
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: RPN6_YEAST (26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae GN=RPN6 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.141e-33
Identity = 74/155 (47.74%), Postives = 104/155 (67.10%), Query Frame = 1
Query:   16 DVAGIISSKAGLQ-YVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSA 477
            DV  I+++K   + Y    +DAMKAVA+A++ RSL  F TAL+ ++ +L  D +   H ++LYDTLLE NLC++IEP+  VEI+HI+++I L    VE KLSQMILDK F G LDQG G L ++E P  DA Y + LE +  + KVVD  F +++
Sbjct:  277 DVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKAS 431          
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: YMJ5_CAEEL (Uncharacterized protein F59B2.5 OS=Caenorhabditis elegans GN=F59B2.5 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 60/158 (37.97%), Postives = 102/158 (64.56%), Query Frame = 1
Query:   10 TRDVAGIISSKAGLQYV-GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAI--YPATLETISNMGKVVDSFFVRS 474
            T  +AG++++K  + Y   P + A++++ADA  KRSLK F  AL + K +L ED +V  H  +L   +LE+ + R+IEPYS +E+++IA +I + +  VE+ +++MILDKK  G++DQ    ++++  PKADA   +  +L+TI  + K VD  + R+
Sbjct:  309 TEQLAGLLAAKEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTVVVY--PKADAANQFTRSLKTIRELTKTVDVSYSRT 464          
The following BLAST results are available for this feature:
BLAST of CX290362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD11_MOUSE2.708e-4356.4126S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN3.537e-4356.4126S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN3.537e-4356.4126S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_SCHPO7.880e-4354.14Probable 26S proteasome regulatory subunit rpn6 OS... [more]
PSD11_DICDI1.941e-4150.3126S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_YEAST1.141e-3347.7426S proteasome regulatory subunit RPN6 OS=Saccharo... [more]
YMJ5_CAEEL6.936e-2337.97Uncharacterized protein F59B2.5 OS=Caenorhabditis ... [more]
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Properties
Property NameValue
Genbank descriptionC02023D07SK IF1 Citrus clementina cDNA clone C02023D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290362 ID=CX290362; Name=CX290362; organism=Citrus clementina; type=EST; length=678bp
GAATTCGGCACGAGGGATGTTGCTGGGATAATTTCTTCTAAGGCTGGCCT
GCAGTATGTTGGGCCAGAATTAGATGCTATGAAAGCTGTTGCTGATGCTC
ATTCCAAGAGGTCCTTGAAGTTGTTTGAGACTGCTCTACGTGATTTCAAG
GCTCAGCTTGAGGAAGACCCAATTGTGCATAGGCACCTCTCATCTCTTTA
TGACACACTTCTGGAACAAAACCTGTGCAGGTTGATTGAGCCTTACTCAA
GGGTAGAGATAGCACACATTGCAGAGCTCATTGAGCTGCCGATAGATCAT
GTAGAGAAAAAGTTATCCCAAATGATTTTGGACAAGAAATTTGCTGGGAC
ATTAGATCAGGGCGTTGGATGCCTCATCATATTTGAAGATCCTAAGGCAG
ATGCCATCTATCCTGCCACTTTAGAAACCATTTCCAACATGGGCAAGGTT
GTGGACAGCTTTTTTGTGAGGTCTGCCAAGATTATGGCATGAGGGTTTCT
TTTGTGTTTTTTGGTGGGCACTCCTTAGTTCATGGTTCTGCTTCCTGTCT
TTCTATTGTTTCTGAATTATTGCAGACTTGATAATGGATATGTTAGTAGG
AAACTTGATTTTACATTCACTGTAACTGCATTAACTATGTTTCTTTGATC
TGTGATGAAATTCTCCACCATGGTTCAT
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