CX290362
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3) HSP 1 Score: 175.252 bits (443), Expect = 2.708e-43 Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 1 Query: 16 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKI 483 DV ++S K L+Y G + +A+K VA A RSL FE AL D++A+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L VE+KLSQMILDKKF G LDQG G LIIF++P D Y A LETI NM KVVDS + ++ K+ Sbjct: 266 DVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKL 421
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3) HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43 Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 1 Query: 16 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKI 483 DV ++S K L+Y G + +A+K VA A RSL FE AL D++A+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L VE+KLSQMILDKKF G LDQG G LIIF++P D Y A LETI NM KVVDS + ++ K+ Sbjct: 266 DVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3) HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43 Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 1 Query: 16 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKI 483 DV ++S K L+Y G + +A+K VA A RSL FE AL D++A+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L VE+KLSQMILDKKF G LDQG G LIIF++P D Y A LETI NM KVVDS + ++ K+ Sbjct: 266 DVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43 Identity = 85/157 (54.14%), Postives = 111/157 (70.70%), Query Frame = 1 Query: 16 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKIM 486 +V +++ K ++Y G +++AM+A+A AH RSL FE AL+D+K +L DPI+ HLSSLYD LLEQNL R++EP+SRVE++HIAELI L VE KLSQMILDK F G LDQG GCLI++++P+ D Y A LE I NMG VVD A + Sbjct: 264 EVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASAL 420
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.941e-41 Identity = 80/159 (50.31%), Postives = 117/159 (73.58%), Query Frame = 1 Query: 10 TRDVAGIISSKAGLQYVGPE-LDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSAKI 483 T DV +++ K GL+Y ++A+ ++ +H+KRSL +F+ ++F QL +DPI+H HL+ LY LLEQNLCR+IEP+SRVEI+HIA+LI+LP+D VE+KLS MILDKK+ G LDQG G LI+FE+ K D ++ +LETI + +VVD + ++ K+ Sbjct: 254 TDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVDLLYEKTNKL 412
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: RPN6_YEAST (26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae GN=RPN6 PE=1 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.141e-33 Identity = 74/155 (47.74%), Postives = 104/155 (67.10%), Query Frame = 1 Query: 16 DVAGIISSKAGLQ-YVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSFFVRSA 477 DV I+++K + Y +DAMKAVA+A++ RSL F TAL+ ++ +L D + H ++LYDTLLE NLC++IEP+ VEI+HI+++I L VE KLSQMILDK F G LDQG G L ++E P DA Y + LE + + KVVD F +++ Sbjct: 277 DVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKAS 431
BLAST of CX290362 vs. ExPASy Swiss-Prot
Match: YMJ5_CAEEL (Uncharacterized protein F59B2.5 OS=Caenorhabditis elegans GN=F59B2.5 PE=2 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23 Identity = 60/158 (37.97%), Postives = 102/158 (64.56%), Query Frame = 1 Query: 10 TRDVAGIISSKAGLQYV-GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAI--YPATLETISNMGKVVDSFFVRS 474 T +AG++++K + Y P + A++++ADA KRSLK F AL + K +L ED +V H +L +LE+ + R+IEPYS +E+++IA +I + + VE+ +++MILDKK G++DQ ++++ PKADA + +L+TI + K VD + R+ Sbjct: 309 TEQLAGLLAAKEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTVVVY--PKADAANQFTRSLKTIRELTKTVDVSYSRT 464 The following BLAST results are available for this feature:
BLAST of CX290362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290362 ID=CX290362; Name=CX290362; organism=Citrus clementina; type=EST; length=678bpback to top |