CX290363

Overview
NameCX290363
Unique NameCX290363
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig206 contig Ccv1_Contig206:19..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290363 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.462e-49
Identity = 93/118 (78.81%), Postives = 106/118 (89.83%), Query Frame = 3
Query:    3 LGPHAYTGSKHAVLGLNKNVAAELGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVGFRNFVARNANMQGTELTANDVANAVLFLASDEARYISGTNLMVDGGFTSVNHSLRVFR 356
            +GPH+Y GSKHAVLGL ++VAAELG++GIRVNCVSPYAVAT LALAHLPEEERTEDA VGFRNF A NAN++G ELT +DVANAVLFLASD++RYISG NLM+DGGFT  NHS +VFR
Sbjct:  168 VGPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGFRNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVFR 285          
BLAST of CX290363 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 60/116 (51.72%), Postives = 79/116 (68.10%), Query Frame = 3
Query:   12 HAYTGSKHAVLGLNKNVAAELGKYGIRVNCVSPYAVATGLALAHLPEEERTEDAMVGFRNFVARNANMQGT-ELTANDVANAVLFLASDEARYISGTNLMVDGGFTSVNHSLRVFR 356
            HAYT SKHA++G  +N A ELG++GIRVNCVSP  VAT LA A +  ++   +A+      +A +AN++G   L A+D+A A LFLASD+ RY+SG NL VDGG + VN S   FR
Sbjct:  164 HAYTTSKHALVGFTENAAGELGRHGIRVNCVSPAGVATPLARAAMGMDDEAIEAI------MANSANLKGAGALKADDIAAAALFLASDDGRYVSGQNLRVDGGLSVVNSSFGFFR 273          
BLAST of CX290363 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 60/128 (46.88%), Postives = 75/128 (58.59%), Query Frame = 3
Query:    3 LGPHAYTGSKHAVLGLNKNVAAELGKYGIRVNCVSPYAVATGLALA--HLPEEERTEDA-----------------MVGFRNFVARNANMQGTELTANDVANAVLFLASDEARYISGTNLMVDGGFTS 329
            LGPHAYT SKHA++GL KN A EL  +G+RVNCVSP+ VAT + +       ++ T DA                 +      V   A ++G  L   D+A AVLFLASDEARYISG NL+VDGG T+
Sbjct:  202 LGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQGHDDATADADRDLDLDLDVTVPSDQEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTT 329          
BLAST of CX290363 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 3
Query:   15 AYTGSKHAVLGLNKNVAAELGKYGIRVNCVSPYAVATGLALAHLPEEER----TEDAMVGFRNFVARNANMQGTELTANDVANAVLFLASDEARYISGTNLMVDGGFTS 329
            AY  +KH ++GL K VA E+ + G+ VN + P  V T L    +P++ R    TE+ ++   N V          +T   VA+  L+LA D+A  I+GT++ +DGG+T+
Sbjct:  152 AYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVI---NEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGWTA 257          
The following BLAST results are available for this feature:
BLAST of CX290363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ABA2_ARATH2.462e-4978.81Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
MOMAS_ORYSJ6.106e-2451.72Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
TS2_MAIZE3.351e-2246.88Sex determination protein tasselseed-2 OS=Zea mays... [more]
BDHA_RHIME4.539e-1134.86D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
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Properties
Property NameValue
Genbank descriptionC02023D08SK IF1 Citrus clementina cDNA clone C02023D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290363 ID=CX290363; Name=CX290363; organism=Citrus clementina; type=EST; length=671bp
GTCTTGGCCCACATGCCTATACGGGGTCCAAGCATGCCGTTTTGGGACTC
AACAAGAATGTTGCCGCAGAGCTTGGAAAATATGGCATCCGCGTGAACTG
TGTTTCTCCTTATGCTGTTGCAACAGGCTTGGCTTTGGCTCACTTGCCTG
AAGAGGAGAGGACAGAGGATGCCATGGTAGGTTTCCGTAATTTTGTTGCA
AGAAATGCTAACATGCAGGGCACGGAGTTGACAGCCAATGATGTGGCTAA
TGCTGTGCTCTTCCTAGCAAGTGATGAAGCTAGGTACATAAGTGGAACGA
ATCTGATGGTTGATGGGGGCTTCACATCTGTGAATCATTCACTTCGAGTC
TTTAGATAAAATATTGGTTCCACGCCAATCAACAATTAGATGCATAAAAG
GTGATTGGAGCATTTGAGTTTCTTCGTTATTTCAGTTAGATACCTGCAAT
TGATTCCATATTTCAAGTATCATGGTAGATTATTGGGTTGCATAAGAATG
AACCGTTTAAGAAAGTGTGATGCAAATGTGATTGGGGTTTACTTGTTAGG
ACTATTGAGAACTCGTAAGCATGTACTTCTTAGATTATGAAAACTTGTTG
ATGTATGTGTTTGAAACCTTTTGATCATGATTCATGGGTTGAAATGTTCA
ATACAGTAATTAGATTAACGC
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