CX290410

Overview
NameCX290410
Unique NameCX290410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290410 vs. ExPASy Swiss-Prot
Match: COG2_DICDI (Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium discoideum GN=cog2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 54/189 (28.57%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   49 EVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE-RAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAP 612
            E+L+L+   ILE  K+L  ++P +   I + L+ K +E +  +  + +TYRMTNKP+P + S YVS ++ PL+ L+  +  ++ ++ PE K    +   T +T  +   A  LI    ++   + K+     +++  ++  S  ++SD DKI +QL+LD+ ++G  +   G+      P+  L   V P
Sbjct:  710 EILNLINDGILESCKTLEQLIPRISIIIENHLISKCLEPIEIISTLRSTYRMTNKPVPTKPSIYVSNLISPLEILINNKASSLHFIPPEIKLNWAISVLTPVTESFKNAATNLIQSVTQSNDIINKM----VKKSKPTTTTSGGDMSDMDKISLQLYLDVDKFGLYIQKFGINLLTFEPFLGLKSIVEP 894          
BLAST of CX290410 vs. ExPASy Swiss-Prot
Match: COG2_MOUSE (Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 60/210 (28.57%), Postives = 103/210 (49.05%), Query Frame = 1
Query:    4 DYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHN--VSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQS 627
            D L  V Q L     +    +  ++ +   +LS+ +P + + IV  L E     L+    +   YR TNK +P   S YV   L+PL  L  G      + P      L +A +  T RY E  +++++  +K E SL +++Q   RR+ A++ VS     +SD DKI +QL LD++  G  +  +G+Q +DI  + +L + +  +  Q+
Sbjct:  521 DLLETVKQKLEMIGFKNFSSISAALEDSQSALSAHVPALSSRIVQDLSESCFSYLKSALEVPRLYRRTNKEVPSTASSYVDSALKPLYQLQSGHGDK--VQPAVMQSWLQEALSDSTHRYFETVSDVLNSVKKMEESLKRLKQA--RRSPATNPVSSSGGGMSDDDKIRLQLALDVEHLGEQIQRMGLQTSDIKSFPALMELILAARDQA 726          
BLAST of CX290410 vs. ExPASy Swiss-Prot
Match: COG2_DROME (Conserved oligomeric Golgi complex subunit 2 OS=Drosophila melanogaster GN=ldlCp PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 57/196 (29.08%), Postives = 97/196 (49.49%), Query Frame = 1
Query:   31 LSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALV-EKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPS 615
            +  C+    D++ +S+     +L + L  +  T+V+ L+ E   E++RQ+  +   YR TN+ +P R S YV  +LRPLK   +   +   L      ++L + A+ IT  Y  + +++++  +KTE SL ++R      A   S  S   +SD DKI +QL +D+  + + L  L  QA  I     L   V  S
Sbjct:  509 VEQCTKIFSDVLAKSMSCLADTLGAHLTNIQKTLVELLIGECETENVRQVNDLPRLYRKTNREVPTRCSSYVEQMLRPLKAFAQQNESQ--LGTLVVEQILAEVASHITKAYFNVVSDVLTSVQKTEESLRRLRNVKSGGAATVSTGSSAVMSDDDKIRVQLRVDVTSWRQELCKLNFQATQIDKLVELTNMVEDS 702          
BLAST of CX290410 vs. ExPASy Swiss-Prot
Match: COG2_HUMAN (Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 52/188 (27.66%), Postives = 96/188 (51.06%), Query Frame = 1
Query:   64 VKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQS 627
            +  ++ +   S S+ +P + + I+  L +     L+    +   YR TNK +P   S YV   L+PL  L  G +    L      + L    ++ T +Y+E  +++++  +K E SL +++Q A++   A+       +SD DKI +QL LD++  G  +  LG+QA+DI  + +L + VA +  Q+
Sbjct:  549 ISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEVPTTASSYVDSALKPLFQLQSGHKDK--LKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKMEESLKRLKQ-ARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFSALAELVAAAKDQA 733          
The following BLAST results are available for this feature:
BLAST of CX290410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
COG2_DICDI7.036e-2128.57Conserved oligomeric Golgi complex subunit 2 OS=Di... [more]
COG2_MOUSE1.622e-1728.57Conserved oligomeric Golgi complex subunit 2 OS=Mu... [more]
COG2_DROME8.901e-1629.08Conserved oligomeric Golgi complex subunit 2 OS=Dr... [more]
COG2_HUMAN3.382e-1527.66Conserved oligomeric Golgi complex subunit 2 OS=Ho... [more]
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Properties
Property NameValue
Genbank descriptionC02023H07SK IF1 Citrus clementina cDNA clone C02023H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290410 ID=CX290410; Name=CX290410; organism=Citrus clementina; type=EST; length=713bp
GGTGACTATCTGACTCATGTACTTCAGCTCCTGTCTTCATGCTCCAGTGA
AGTTCTTGATCTTGTTAAACAGAGTATTTTAGAGGGTGGAAAGTCGTTGA
GTTCAATGCTACCCGTAGTTATCAACACAATAGTTGATGCACTTGTTGAG
AAGGCTGTTGAGGATTTGAGACAACTGAAGGGAATAACTGCAACTTATAG
GATGACTAATAAACCCCTTCCTGTCAGGCACTCTCCTTATGTGTCTGGAG
TGTTGCGTCCCTTGAAGACTCTATTGGAAGGAGAGCGAGCTATGACATAC
TTGACACCAGAGGCTAAGAATGAACTACTGCTTGATGCTGCAACTCAGAT
AACCAGTCGCTATCATGAATTAGCTGCTGAACTTATCAGTGTGGCTAGGA
AAACAGAGTCTTCACTGTTGAAGATACGGCAGGGTGCACAAAGGCGGGCT
GGAGCAAGCTCAGATGTCTCAGACCACAATGTATCTGACACTGATAAGAT
TTGTATGCAACTGTTTCTTGATATTCAGGAGTATGGGCGCAGCCTTGCTG
CTCTTGGGGTTCAAGCAGCTGATATTCCCCCATACCGTTCCTTGTGGCAA
TGTGTTGCACCTTCCGATAGGCAAAGCCTGATAAAGTTCTAAGAGAGTTT
TGGCTCTGGGCAAATTGTGGATTTAGTGTTTAATGCTGGATTCTAAGTAT
ACCGTTTTAGTTT
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