CX290410
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290410 vs. ExPASy Swiss-Prot
Match: COG2_DICDI (Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium discoideum GN=cog2 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21 Identity = 54/189 (28.57%), Postives = 101/189 (53.44%), Query Frame = 1 Query: 49 EVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE-RAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAP 612 E+L+L+ ILE K+L ++P + I + L+ K +E + + + +TYRMTNKP+P + S YVS ++ PL+ L+ + ++ ++ PE K + T +T + A LI ++ + K+ +++ ++ S ++SD DKI +QL+LD+ ++G + G+ P+ L V P Sbjct: 710 EILNLINDGILESCKTLEQLIPRISIIIENHLISKCLEPIEIISTLRSTYRMTNKPVPTKPSIYVSNLISPLEILINNKASSLHFIPPEIKLNWAISVLTPVTESFKNAATNLIQSVTQSNDIINKM----VKKSKPTTTTSGGDMSDMDKISLQLYLDVDKFGLYIQKFGINLLTFEPFLGLKSIVEP 894
BLAST of CX290410 vs. ExPASy Swiss-Prot
Match: COG2_MOUSE (Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17 Identity = 60/210 (28.57%), Postives = 103/210 (49.05%), Query Frame = 1 Query: 4 DYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHN--VSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQS 627 D L V Q L + + ++ + +LS+ +P + + IV L E L+ + YR TNK +P S YV L+PL L G + P L +A + T RY E +++++ +K E SL +++Q RR+ A++ VS +SD DKI +QL LD++ G + +G+Q +DI + +L + + + Q+ Sbjct: 521 DLLETVKQKLEMIGFKNFSSISAALEDSQSALSAHVPALSSRIVQDLSESCFSYLKSALEVPRLYRRTNKEVPSTASSYVDSALKPLYQLQSGHGDK--VQPAVMQSWLQEALSDSTHRYFETVSDVLNSVKKMEESLKRLKQA--RRSPATNPVSSSGGGMSDDDKIRLQLALDVEHLGEQIQRMGLQTSDIKSFPALMELILAARDQA 726
BLAST of CX290410 vs. ExPASy Swiss-Prot
Match: COG2_DROME (Conserved oligomeric Golgi complex subunit 2 OS=Drosophila melanogaster GN=ldlCp PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16 Identity = 57/196 (29.08%), Postives = 97/196 (49.49%), Query Frame = 1 Query: 31 LSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALV-EKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPS 615 + C+ D++ +S+ +L + L + T+V+ L+ E E++RQ+ + YR TN+ +P R S YV +LRPLK + + L ++L + A+ IT Y + +++++ +KTE SL ++R A S S +SD DKI +QL +D+ + + L L QA I L V S Sbjct: 509 VEQCTKIFSDVLAKSMSCLADTLGAHLTNIQKTLVELLIGECETENVRQVNDLPRLYRKTNREVPTRCSSYVEQMLRPLKAFAQQNESQ--LGTLVVEQILAEVASHITKAYFNVVSDVLTSVQKTEESLRRLRNVKSGGAATVSTGSSAVMSDDDKIRVQLRVDVTSWRQELCKLNFQATQIDKLVELTNMVEDS 702
BLAST of CX290410 vs. ExPASy Swiss-Prot
Match: COG2_HUMAN (Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15 Identity = 52/188 (27.66%), Postives = 96/188 (51.06%), Query Frame = 1 Query: 64 VKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQS 627 + ++ + S S+ +P + + I+ L + L+ + YR TNK +P S YV L+PL L G + L + L ++ T +Y+E +++++ +K E SL +++Q A++ A+ +SD DKI +QL LD++ G + LG+QA+DI + +L + VA + Q+ Sbjct: 549 ISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEVPTTASSYVDSALKPLFQLQSGHKDK--LKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKMEESLKRLKQ-ARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFSALAELVAAAKDQA 733 The following BLAST results are available for this feature:
BLAST of CX290410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290410 ID=CX290410; Name=CX290410; organism=Citrus clementina; type=EST; length=713bpback to top |