CX290412

Overview
NameCX290412
Unique NameCX290412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6016 contig Ccv1_Contig6016:855..1607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290412 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   94 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 324
            ++ N+T+FVG L   VS+E+L+  F  FGEI+ VKIP GKGCGFVQF NR+ AE+A+ +LQG  +G   +RLSWGRN
Sbjct:  299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of CX290412 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  103 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 324
            N T+FVG L S++S++DL+  F  FG IL++KIP GKGCGFVQ++ +  AE A+  +QG  +G   +RL+WG N
Sbjct:  296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of CX290412 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.418e-16
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   94 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 324
            + NN T+F+G L S V++++LR  F  FG I+ VKIPVGK CGFVQ+ +R  AE A+  +QG  I    VRLSWGR+
Sbjct:  309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CX290412 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   94 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 321
            +  N T+FVG L    ++  LR  F  FG IL+V+IP GK CGFV+F  R DAE ++Q LQG  +G   +RLSWGR
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431          
The following BLAST results are available for this feature:
BLAST of CX290412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YG41_SCHPO6.586e-2057.14Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO1.983e-1650.00RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST4.418e-1651.95Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NGR1_YEAST1.421e-1450.00Negative growth regulatory protein NGR1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionC02023H09SK IF1 Citrus clementina cDNA clone C02023H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290412 ID=CX290412; Name=CX290412; organism=Citrus clementina; type=EST; length=752bp
GGATATCAACAACAGTATTCTTCACAAGCTCTTGTATTGGCCGGTGGACC
TGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATCTGATGGCGAGTCCA
ATAATGCGACTATATTTGTTGGGGCACTTGATTCTGATGTCAGTGATGAG
GATCTCAGAGAGCCTTTTTCTCAGTTTGGTGAGATTCTTTCTGTTAAAAT
ACCTGTTGGTAAAGGATGTGGATTTGTGCAATTTGCAAACAGAAAGGATG
CTGAGGTTGCATTGCAGAAGTTACAAGGGACCGCTATAGGCAAGCAAACA
GTCCGTCTTTCTTGGGGTCGCAATCCTGGGAACAAACAGTGGAGAGGAGA
TCACAGTAACCACTGGAATGGGGCACACTATGGAGGTCAGGGCTATAGTG
GCAATGGATATGCTTTTCCGCCAAATCAAGATCCAAACATGTATGCTGCA
ACAGCGGTTCCCGGTGCTTCTTAAGAAGTATGAGGGTAGTACGACACCGT
GTAATCTGAACTTGCTGAACTGGCTGAAATTACCCAATGAGATCTATGAA
CTAAAGTAGGATGGATTTTGCTGCTGAATATGTAGCTAAATCTGTAGTTT
GCAGAATTTTGTAGCTGGAATATACTTAATAGCTTGGAGATGTGTGAGGC
TTGTATTATTATTTTTCATTCTTGGGGAGTCTGTTTGAGAGGGATTGTTA
TGTTTGTGTTTCTGACTAACTCAGAGGAGATGCCAGACAGACTCTTGATG
CC
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