CX290425

Overview
NameCX290425
Unique NameCX290425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8853 contig Ccv1_Contig8853:2..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.535e-41
Identity = 91/132 (68.94%), Postives = 92/132 (69.70%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 462
            MAGRGKTL                LQFPVGRIARFLK GKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG S   A D+
Sbjct:    1 MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPSAEDD 132          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.146e-40
Identity = 89/125 (71.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 441
            MAGRGKTL                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G S
Sbjct:    1 MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGAS 125          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.803e-40
Identity = 91/133 (68.42%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 465
            MAGRGK L                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G+  SK  +ED
Sbjct:    1 MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGS--SKPTEED 131          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.781e-40
Identity = 89/134 (66.42%), Postives = 94/134 (70.15%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADEDS 468
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S + AAD+DS
Sbjct:    1 MAGRGKAIGSGAAKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSKAVAADDDS 134          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.244e-40
Identity = 88/133 (66.17%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 465
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S   AA +D
Sbjct:    1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.244e-40
Identity = 88/133 (66.17%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 465
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S   AA +D
Sbjct:    1 MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.817e-39
Identity = 90/133 (67.67%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 465
            MAGRGKTL                LQFPVGRIARFLK GKYA RVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPKK G S   +ADED
Sbjct:    1 MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGAS-KPSADED 132          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.099e-39
Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 465
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S   AA +D
Sbjct:    1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.099e-39
Identity = 87/133 (65.41%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 465
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S   AA +D
Sbjct:    1 MAGRGKAIGSGAAKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133          
BLAST of CX290425 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 84/133 (63.16%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   67 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 465
            MAGRGK +                LQFPVGRIARFLKAGKYAERVGAGAP                  GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +  AD+D
Sbjct:    1 MAGRGKAIGAGAAKKATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133          
The following BLAST results are available for this feature:
BLAST of CX290425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A1_ARATH2.535e-4168.94Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A6_ARATH2.146e-4071.20Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A3_ARATH2.803e-4068.42Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A7_WHEAT4.781e-4066.42Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A3_ORYSJ6.244e-4066.17Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI6.244e-4066.17Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A2_ARATH1.817e-3967.67Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A2_ORYSJ3.099e-3965.41Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI3.099e-3965.41Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A8_ORYSI9.969e-3863.16Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02024A11SK IF1 Citrus clementina cDNA clone C02024A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290425 ID=CX290425; Name=CX290425; organism=Citrus clementina; type=EST; length=680bp
CAAGCCAAGTCTCAACCTTTTGCTCTTTCCATTTTCCTTTCTTCGTTAAG
AGCTTATTCACTTGAGATGGCGGGTCGGGGCAAGACTCTCGGGTCCGGGG
CGGCGAAGAAGGCCACCTCACGTAGCAGCAAAGCGGGGCTTCAATTTCCC
GTCGGTCGTATTGCCAGGTTCCTGAAAGCCGGGAAATATGCTGAACGGGT
CGGTGCCGGAGCCCCGGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCG
CTGAGGTTTTGGAATTAGCTGGAAATGCTGCAAGGGACAACAAGAAAACA
CGAATTGTCCCTCGCCACATCCAATTGGCTGTCAGGAATGATGAGGAGCT
CAGCAAGCTTCTTGGGGATGTTACCATTGCTAACGGTGGTGTGATGCCCA
ACATCCACAACCTTCTCCTTCCCAAGAAGACTGGAACTTCAGGGTCCAAG
GCTGCTGATGAAGACAGTTAAATTCTCATCACTAGAAGAGTCAAAGTGAT
GATCAACACTCTTTGTGTTAATTGTGCTATGTGACATTTGCCTTTTTAGT
GTTTGTTTAGTTAGTTTGTTGTTTTTGTGGTTGTAGTTAGGATTTCAAAT
AGCTATGTTTGTGTATAATTTCTCTCAGTTGCTTAATAGAAGAAGAATTG
CTTTTTAAAAAAAAAAAAAAAAAAAAAAAA
back to top