CX290430

Overview
NameCX290430
Unique NameCX290430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290430 vs. ExPASy Swiss-Prot
Match: G6PD4_ARATH (Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic OS=Arabidopsis thaliana GN=At1g09420 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.332e-20
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 3
Query:   15 LFLRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGTYYLWAKHGVQWTED 182
            LF+RSDE+ AAWNIL+PVL+EIDK++ APELYE GGRGPV  YYLWAKHGV W +D
Sbjct:  570 LFMRSDEVAAAWNILSPVLEEIDKHHTAPELYEFGGRGPVAAYYLWAKHGVPWADD 625          
BLAST of CX290430 vs. ExPASy Swiss-Prot
Match: G6PDC_SOLTU (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   12 RLFLRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGTYYLWAKHGVQW 173
            RLF+RSDEL AAW +  P+L+E+++  IAPELY  G RGPVG +YL AKH V+W
Sbjct:  517 RLFIRSDELDAAWALFTPLLKELEEKKIAPELYPYGSRGPVGAHYLAAKHNVRW 570          
BLAST of CX290430 vs. ExPASy Swiss-Prot
Match: G6PDC_SPIOL (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Spinacia oleracea GN=G6PD PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.244e-14
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   12 RLFLRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGTYYLWAKHGVQW 173
            RLF+RSD+L AAW++  P+L+E+++  +APELY  G RGPVG +YL AKH V+W
Sbjct:  513 RLFIRSDKLDAAWSLFTPLLKELEEKKVAPELYPYGSRGPVGAHYLAAKHNVRW 566          
BLAST of CX290430 vs. ExPASy Swiss-Prot
Match: G6PD3_ARATH (Glucose-6-phosphate 1-dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=At1g24280 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.992e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 3
Query:   12 RLFLRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGTYYLWAKHGVQW 173
            RLF+RSDEL AAW +  P+L+EI++    PE Y  G RGPVG +YL AKH VQW
Sbjct:  539 RLFIRSDELDAAWALFTPLLKEIEEKKTTPEFYPYGSRGPVGAHYLAAKHKVQW 592          
BLAST of CX290430 vs. ExPASy Swiss-Prot
Match: G6PD2_ARATH (Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g13110 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 3
Query:   12 RLFLRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGTYYLWAKHGVQW 173
            RLF+RSDEL AAW++  P+L+EI++    PE Y  G RGPVG +YL AKH VQW
Sbjct:  536 RLFIRSDELDAAWSLFTPLLKEIEEKKRIPEYYPYGSRGPVGAHYLAAKHKVQW 589          
BLAST of CX290430 vs. ExPASy Swiss-Prot
Match: G6PD1_ARATH (Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=APG1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 3
Query:   12 RLFLRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGTYYLWAKHGVQW 173
            RLF+RSDEL AAW++  P L+E+++  I PELY  G RGPVG +YL +K+ V+W
Sbjct:  517 RLFIRSDELDAAWDLFTPALKELEEKKIIPELYPYGSRGPVGAHYLASKYNVRW 570          
BLAST of CX290430 vs. ExPASy Swiss-Prot
Match: G6PDC_TOBAC (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 3
Query:   12 RLFLRSDELTAAWNILNPVLQEIDKNNIAPELYELGGRGPVGTYYLWAKHGVQW 173
            RLF+RSDEL AAW++  PVL+E++   I PE Y  G RGP+G +YL A++ V+W
Sbjct:  536 RLFIRSDELDAAWSLFTPVLKELEDKKIVPEYYPYGSRGPIGAHYLAARYKVRW 589          
The following BLAST results are available for this feature:
BLAST of CX290430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
G6PD4_ARATH1.332e-2075.00Glucose-6-phosphate 1-dehydrogenase 4, chloroplast... [more]
G6PDC_SOLTU5.419e-1461.11Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PDC_SPIOL9.244e-1457.41Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PD3_ARATH5.992e-1359.26Glucose-6-phosphate 1-dehydrogenase 3, chloroplast... [more]
G6PD2_ARATH7.825e-1359.26Glucose-6-phosphate 1-dehydrogenase 2, chloroplast... [more]
G6PD1_ARATH1.335e-1255.56Glucose-6-phosphate 1-dehydrogenase 1, chloroplast... [more]
G6PDC_TOBAC5.072e-1253.70Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionC02024B04SK IF1 Citrus clementina cDNA clone C02024B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290430 ID=CX290430; Name=CX290430; organism=Citrus clementina; type=EST; length=509bp
GATTCGGCACGAGGCTCTTCCTGAGAAGCGATGAGCTTACTGCTGCATGG
AATATTTTAAACCCAGTTTTACAAGAAATAGACAAGAACAATATTGCACC
AGAACTTTACGAGCTGGGTGGTAGAGGTCCCGTTGGAACATATTATCTTT
GGGCGAAACACGGGGTTCAGTGGACCGAAGATTAGAGGCAACACTTCTTA
TAGGGTAATCTTGCTAATCTTTCCACAACTAAGACAAATAAATGGTAACT
TTGTACATGTAAATTGTATGAAATTAGGGTTGAGAAATGCCTATCAGTAT
TCAGAGGATAATTCTCAAGAGCATAAACCCATAATTGAAATTGGATTTTT
CTTGTAGATGATTTGGGTTATGCTCGCAAACGATGTGCTGAAAGCGTGCA
TCAGAGTCAAAAAGTACCTTAAACTTCATTTTGTAATGAACAAATGATGG
ATGGTTATTTGCTTGTTTTAATATGAAGATTTGTATATGATTAAAAAAAA
AAAAAAAAA
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