CX290462

Overview
NameCX290462
Unique NameCX290462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.620e-56
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 361
            S G G+AAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKDKAWD  W+FWVGPF GAAIAAFYHQF+LRAGA+KALG
Sbjct:  165 SIGTGVAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALG 278          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.470e-55
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 361
            S G GL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSLGAAVIYNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  171 SRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.276e-55
Identity = 100/114 (87.72%), Postives = 108/114 (94.74%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 361
            S G GL AEI+GTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSLGAAV+YNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  173 SRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALG 286          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.587e-55
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 361
            STG GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  166 STGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 279          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.245e-54
Identity = 99/114 (86.84%), Postives = 108/114 (94.74%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 361
            + GVG+ AEIIGTFVLVYTVFSATDPKR+ARDSH+PVLAPLPIGF+VFMVHLATIPITGTGINPARS GAAVIYN  KAWDDQW+FWVGPF+GAAIAAFYHQF+LRAGA+KA G
Sbjct:  165 NVGVGVGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYG 278          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.773e-54
Identity = 101/114 (88.60%), Postives = 106/114 (92.98%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 361
            +TG GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  164 NTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 277          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.773e-54
Identity = 100/114 (87.72%), Postives = 109/114 (95.61%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 361
            S G GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS+GAAVI+N +KAW + W+FWVGPF+GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  171 SKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.622e-54
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 2
Query:   26 GVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 361
            G GL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN +KAWDDQW+FWVGP IGAA AAFYHQFILRA A+KALG
Sbjct:  168 GTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALG 279          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.730e-54
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 352
            S G GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  170 SKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 280          
BLAST of CX290462 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.730e-54
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 2
Query:   20 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 352
            S G GLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  171 SKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 281          
The following BLAST results are available for this feature:
BLAST of CX290462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
PIP25_ARATH8.620e-5690.35Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP21_MAIZE1.470e-5589.47Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE3.276e-5587.72Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_ARATH5.587e-5590.35Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_ARATH1.245e-5486.84Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH2.773e-5488.60Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ORYSJ2.773e-5487.72Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP24_ARATH3.622e-5490.18Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP24_MAIZE4.730e-5491.89Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE4.730e-5491.89Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02024D12SK IF1 Citrus clementina cDNA clone C02024D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290462 ID=CX290462; Name=CX290462; organism=Citrus clementina; type=EST; length=701bp
GAGGGCTGGCCGATGGGTCAGCACAGGCGTTGGATTGGCCGCCGAGATCA
TCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCACTGATCCCAAG
AGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCGCTCCCCATTGG
ATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCACTGGCACTG
GCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGAC
AAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGC
AGCAATTGCGGCTTTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCA
AGGCTCTTGGTTCATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGA
CAAGTGGATTATCCACATCTTCATGGGGTTAATGATTTAAAATTGGAAAG
AAAAAACTGGGAAGGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAAT
GAGGGGGGGTGTGATTTGTGCTTTCAAGGAGTTGTAGGCAAAAAGTCTCT
TAGACAATGAGGGGGCTTGCTTTTTTGTAATCCCCTCTGTTGTTTTCAAG
CACTTTCCTTAGAATTCACTTCTTCAATGTTTCTGTCTCTTTCTACTTTG
TATTATTTTCTCCGTATGTGATTATTATTATTATTGTTGTGCTTTAAGGA
A
back to top