CX290473

Overview
NameCX290473
Unique NameCX290473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.919e-71
Identity = 127/167 (76.05%), Postives = 152/167 (91.02%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 501
            GLGGLGHMAVKFGKAFGL+VTV STS SKKEEAL+LLGA+ FV+SSD +QMKAL KSLDF++DTASGDH FD YMSLLK+AG YVLVGFPS++K SPA+LN+G + ++GSVTGGTK TQ+ML++CAAHKIYP IE IPI+ +NEALER++K+D+KYRFVIDI+NSLK
Sbjct:  189 GLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSEIKISPANLNLGMRMLAGSVTGGTKITQQMLDFCAAHKIYPNIEVIPIQKINEALERVVKKDIKYRFVIDIKNSLK 355          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.829e-63
Identity = 116/167 (69.46%), Postives = 142/167 (85.03%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 501
            GLGGLGHMAVKFGKAFGL VTV+STS SK++EA+ LLGAD FVVSSD  QM+ L  SL+FIIDTASGDHPFD Y++LLKV GV  L+ FPS++K  PA+LN+G +++SGSVTGGTKD QEM+ +CAA+KIYP IE I I+ +NEAL+RL+ RDV++RFVIDI+NS K
Sbjct:  188 GLGGLGHMAVKFGKAFGLKVTVISTSESKRKEAIDLLGADNFVVSSDENQMETLKSSLNFIIDTASGDHPFDPYLTLLKVGGVMALLSFPSEIKVHPANLNLGGRSLSGSVTGGTKDIQEMINFCAANKIYPDIEMIKIDYINEALQRLVDRDVRFRFVIDIENSFK 354          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.875e-61
Identity = 115/167 (68.86%), Postives = 140/167 (83.83%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 501
            GLGGLGHMAVKFGKAFGL VTV STS SK+EEA++LLGAD FV+SSD  QM++L  SL FIIDTASGDH FD Y+SLLKV GV VL+ FPS++K  P +LN+ A++++GSVTGGTKD QEM+ +CAA+ +YP IE I I+ VNEAL+RLI RDV++RFVIDI+NS K
Sbjct:  188 GLGGLGHMAVKFGKAFGLKVTVFSTSESKREEAINLLGADNFVISSDENQMESLKSSLHFIIDTASGDHQFDPYLSLLKVGGVMVLLSFPSEIKVHPENLNLAARSLAGSVTGGTKDIQEMINFCAANNVYPDIEMIKIDYVNEALQRLINRDVRFRFVIDIENSFK 354          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 93/170 (54.71%), Postives = 120/170 (70.59%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK*Q 507
            GLGGLGH+AVKF KAFG  VTV+STS SKKEEA+  LG D+FVVS+D +QM+A   +LD IIDT S  HP    +SLLK  G  ++VG P K    P   L  G +T++GS  GG K+TQEM+++ A + I   +E IPI+ +N A++RL+K DVKYRFVID++ SLK Q
Sbjct:  191 GLGGLGHVAVKFAKAFGTKVTVISTSLSKKEEAMQHLGVDEFVVSTDPQQMQAAVGTLDGIIDTVSAPHPIVPLLSLLKPHGKLIVVGLPDKPLQLPVFPLIQGRRTIAGSGIGGLKETQEMIDFAAKNNIVADVEVIPIDYINTAMDRLLKSDVKYRFVIDVEKSLKPQ 360          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 93/168 (55.36%), Postives = 119/168 (70.83%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 501
            GLGGLGH+AVK  KAFG +VTV+STS SKK+EAL  LGAD+F+VSSD +QM+A   +L  IIDT S  HP    + LLKV G  V+VG P K    P   L +G K ++GS  GG K+TQEML++ A H I   +E IP++ VN A+ERL+K DV+YRFVID+ N++K
Sbjct:  168 GLGGLGHVAVKMAKAFGAHVTVISTSESKKQEALEKLGADEFLVSSDSDQMQAATGTLHGIIDTVSALHPVVPLLGLLKVNGKLVMVGAPEKPLELPVFPLLMGRKVLAGSNIGGLKETQEMLDFAAQHNITADVEVIPVDYVNTAMERLVKSDVRYRFVIDVANTIK 335          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 92/167 (55.09%), Postives = 116/167 (69.46%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSL 498
            GLGGLGH+AVK GKAFGL VTV+S S+ K+ EA+  LGAD F+V++D ++MK    ++DFIIDT S +H      SLLKV G  V +G P K    P  SL +G K V GS  GG K+TQEMLE+CA HKI   IE I + ++N A++RL K DV+YRFVID+ NSL
Sbjct:  187 GLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.750e-43
Identity = 92/168 (54.76%), Postives = 118/168 (70.24%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 501
            GLGGLGHMAVKFGKAFG  VTV+STS +KK+EA++ LGAD FVVS + EQM++   +LD IIDT S  HP    + LLK  G  ++VG P K    P   L  G K ++GS  GG K+TQEM+++ A H I   IE +P++ VN A+ERL+K DV+YRFVID+ N+LK
Sbjct:  192 GLGGLGHMAVKFGKAFGAKVTVISTSPNKKDEAVNRLGADSFVVSREPEQMQSAMGTLDGIIDTVSAAHPLLPLLGLLKSQGKMIMVGVPDKPLELPVFPLLQGRKILAGSCIGGMKETQEMIDFAAKHDIKSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANTLK 359          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.750e-43
Identity = 91/167 (54.49%), Postives = 117/167 (70.06%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSKVKFSPA-SLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSL 498
            GLGGLGH+A+KFGKAFGL VTV+S+S +K+ EA+ +LGAD F++SSD E+MKA   ++D+IIDT S  H   + + LLK+ G  V VG PSK    P   L  G K + GS  GG K+TQEML++C  H I   IE I ++ +N A+ERL K DVKYRFVID+ NSL
Sbjct:  183 GLGGLGHVAIKFGKAFGLKVTVISSSPNKESEAIDVLGADSFLLSSDPEKMKAATGTMDYIIDTISAVHSLVSLLGLLKLNGKLVTVGLPSKPLQLPIFPLVAGRKLIGGSNFGGLKETQEMLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRFVIDVANSL 349          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 91/166 (54.82%), Postives = 114/166 (68.67%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNS 495
            GLGGLGH+A+KFGKAFGL VTV+STS +K+ EA+  LGAD F+VS D E+MKA   ++D+IIDT S  H     + LLK+ G  V VG PSK ++ S   L  G K + GS  GG K+TQEML++C  H I   IE I +  +N A+ERL K DVKYRFVID+ NS
Sbjct:  190 GLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANS 355          
BLAST of CX290473 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 90/168 (53.57%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    1 GLGGLGHMAVKFGKAFGLNVTVLSTSTSKKEEALSLLGADKFVVSSDLEQMKALGKSLDFIIDTASGDHPFDAYMSLLKVAGVYVLVGFPSK-VKFSPASLNIGAKTVSGSVTGGTKDTQEMLEYCAAHKIYPQIETIPIENVNEALERLIKRDVKYRFVIDIQNSLK 501
            GLGGLGH+AVKFGKAFGL+VTV+STS +K+ EA   L AD FVVS+D +QM+A+ +SLD+IIDT +  H     + LLKV G  VLVG P K V+     L  G +TVSGS+TGG K+TQEM++ C  H I   IE +  + +N+AL RL + DV+YRFVI++    K
Sbjct:  192 GLGGLGHVAVKFGKAFGLHVTVISTSPAKEREARENLKADNFVVSTDQKQMQAMTRSLDYIIDTVAATHSLGPILELLKVNGKLVLVGAPEKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDICGEHNITCDIEIVSTDRINDALARLARNDVRYRFVINVGGDSK 359          
The following BLAST results are available for this feature:
BLAST of CX290473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CADH1_ARATH9.919e-7176.05Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
CADH1_ORYSJ5.829e-6369.46Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH4_ORYSJ1.875e-6168.86Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
GEDH1_OCIBA2.303e-4354.71Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
MTDH_PETCR3.928e-4355.36Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CADH2_ARATH3.928e-4355.09Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH_MESCR8.750e-4354.76Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH1_STYHU8.750e-4354.49Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
MTDH_MEDSA2.546e-4254.82Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH6_ORYSJ3.325e-4253.57Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC02024E11SK IF1 Citrus clementina cDNA clone C02024E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290473 ID=CX290473; Name=CX290473; organism=Citrus clementina; type=EST; length=721bp
GGACTTGGTGGTCTTGGTCACATGGCTGTGAAGTTCGGGAAGGCTTTTGG
ATTGAATGTAACAGTTCTCAGTACTAGCACTTCCAAGAAAGAGGAAGCCC
TGAGTCTTCTAGGTGCAGACAAATTTGTTGTGTCATCCGACCTTGAGCAG
ATGAAGGCCTTGGGTAAATCACTGGATTTCATCATCGACACAGCATCTGG
TGATCATCCATTTGATGCGTACATGTCACTGTTGAAGGTTGCTGGTGTTT
ATGTCCTAGTAGGATTTCCCAGCAAAGTTAAATTTAGTCCCGCTAGTCTC
AATATTGGTGCAAAAACTGTTTCCGGTAGTGTAACAGGTGGTACCAAGGA
CACGCAAGAAATGTTGGAGTATTGTGCTGCTCATAAGATTTACCCGCAGA
TAGAAACAATTCCAATTGAGAATGTGAATGAAGCTCTTGAGAGGCTGATA
AAGAGGGATGTAAAGTATCGATTTGTGATTGATATTCAGAACTCCTTGAA
ATAACAACATGGAGGCCAACCTCACTTTATAGCCACATATGGGAGAAGAG
AGATCATGTCCTTGTTCTCTGATTGGCGATTCTTGATACAATAAACCTCT
AAATCCTGCTAGTCATGCTTATGCTGATAATTTTATGCTAATTAAGCATC
ACTACTTGTTCTTTCCTTTCTTAGTTTTTGATTGTTTTGGGGAGACAATA
TGTTTAAGTACGTATCTTTTA
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