CX290475

Overview
NameCX290475
Unique NameCX290475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290475_ssr105 microsatellite CX290475_ssr105:105..116. BLAST: Citrus ESTs to Prunus persica proteins V1
CX290475_ssr165 microsatellite CX290475_ssr165:165..176. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15280 contig Ccv1_Contig15280:15..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.646e-76
Identity = 143/192 (74.48%), Postives = 157/192 (81.77%), Query Frame = 1
Query:  103 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            LKK+KR                      RKLI+ R +QY+KEY E++KELI LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYG+PNLKSV+ELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVGPHF+  N    P
Sbjct:   13 LKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWP 204          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.631e-76
Identity = 140/192 (72.92%), Postives = 158/192 (82.29%), Query Frame = 1
Query:  103 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            LKK+KR                      RKLI+NR KQY+KEY E+++ELI+LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+EDLIHEI+TVGPHF+  N    P
Sbjct:   15 LKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWP 206          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.258e-75
Identity = 138/164 (84.15%), Postives = 151/164 (92.07%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RKLI+ R +QYAKEY E+  ELIRLKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+EDLIHEI+TVGPHF+  N    P
Sbjct:   41 RKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWP 204          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.969e-56
Identity = 105/164 (64.02%), Postives = 128/164 (78.05%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  F+  N    P
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP 209          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.969e-56
Identity = 106/164 (64.63%), Postives = 127/164 (77.44%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMEDLIHEI TVG  F+  N    P
Sbjct:   69 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWP 232          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.969e-56
Identity = 105/164 (64.02%), Postives = 128/164 (78.05%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  F+  N    P
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWP 209          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.969e-56
Identity = 105/164 (64.02%), Postives = 128/164 (78.05%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  F+  N    P
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP 210          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.969e-56
Identity = 105/164 (64.02%), Postives = 128/164 (78.05%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG  F+  N    P
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP 210          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 8.476e-56
Identity = 105/164 (64.02%), Postives = 127/164 (77.44%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMEDLIHEI TVG  F+  N    P
Sbjct:   59 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWP 222          
BLAST of CX290475 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 104/164 (63.41%), Postives = 132/164 (80.49%), Query Frame = 1
Query:  187 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFRRQNTSYGP 678
            R +I+ R + Y KEY + ++E IRL+R AK  G F++  EAKL+F+IRI+GIN + PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSV+ELIYKRGYGK+NKQR+ALTDNSIIE+ LG++GIICMEDLIHEI TVGP+F++ +    P
Sbjct:   46 RAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWP 209          
The following BLAST results are available for this feature:
BLAST of CX290475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL72_ARATH5.646e-7674.4860S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH9.631e-7672.9260S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL73_ARATH1.258e-7584.1560S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_PONAB4.969e-5664.0260S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE4.969e-5664.6360S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA4.969e-5664.0260S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN4.969e-5664.0260S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN4.969e-5664.0260S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT8.476e-5664.0260S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_NEUCR3.221e-5563.4160S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC02024F01SK IF1 Citrus clementina cDNA clone C02024F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290475 ID=CX290475; Name=CX290475; organism=Citrus clementina; type=EST; length=693bp
ACGAGGGCCAGATCGCCTCCGTGAAGAAGATAGACGTCTAAAAGACCTCT
AAGAACAAAAGAGATGGCTGAAGCGGCAGCTGTTGTGGTACCAGAGTCAG
TGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGAAGCAG
GAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCATTTA
CAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAAGAAC
TCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGTCAAC
CCAGAAGCTAAGCTTTTGTTTATCATCAGGATTCGCGGTATCAATGCTGT
TGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAGATTT
TTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGCTGCAC
AGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAG
AGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTG
CTTTGACCGACAATTCTATCATTGAACAGGCTCTTGGGCAGCATGGAATT
ATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTT
CAGGAGGCAAAACACTTCCTATGGCCCTTCAGCTCAGGCACCA
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