CX290478
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51 Identity = 102/226 (45.13%), Postives = 146/226 (64.60%), Query Frame = 1 Query: 7 FQTKRDARGQVERYKARLVAKGFSQREGIDFTETYSPVSTKDSFRIIMALVAHFNLELHQMDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYL-RVSGSKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEAHYVLGIEILRDRSRGILGLSQKTYIDRILKRFNLQSCAPGKAPIS 681 F+ K+D ++ RYKARLV KGF Q++GIDF E +SPV S R I++L A +LE+ Q+DVKTAFL+G L E++YM QP+GF +++MVCKL +S+YGLKQA RQWY+KF + S + + D C+Y R S + D L+ + K LS SFDMKDLG A +LG++I+R+R+ L LSQ+ YI+R+L+RFN+++ P P++ Sbjct: 861 FKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLA 1086
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38 Identity = 89/226 (39.38%), Postives = 132/226 (58.41%), Query Frame = 1 Query: 7 FQTKRDARGQVERYKARLVAKGFSQREGIDFTETYSPVSTKDSFRIIMALVAHFNLELHQMDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYLRVSG--SKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEAHYVLGIEILRDRSRGILGLSQKTYIDRILKRFNLQSCAPGKAPI 678 F K + G RYKARLVA+GF+Q+ ID+ ET++PV+ SFR I++LV +NL++HQMDVKTAFLNG+L E++YM P G + + +N VCKL ++IYGLKQA+R W+ F + F ++VD+CIY+ G ++ D + K+ L F M DL E + +GI I + + LSQ Y+ +IL +FN+++C P+ Sbjct: 941 FSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG-ISCNSDN-VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDK--IYLSQSAYVKKILSKFNMENCNAVSTPL 1162
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11 Identity = 46/164 (28.05%), Postives = 72/164 (43.90%), Query Frame = 1 Query: 187 MDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYLRVSGSKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEAHYVLGIEILRDRSRGILGLSQKTYIDRILKRFNLQSCAPGKAPI 678 MDV TAFLN ++ E +Y+ QP GFV + V +L +YGLKQA W ++ + GF + + +Y R + + KQ L+ + MKDLG+ LG+ I S G + LS + YI + + + + P+ Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNI-HQSSNGDITLSLQDYIAKAASESEINTFKLTQTPL 163
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY4B-J PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 51/210 (24.29%), Postives = 103/210 (49.05%), Query Frame = 1 Query: 46 YKARLVAKGFSQREGIDFTETYSPVSTK----DSFRIIMALVAHFNLELHQMDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYLRVSGSKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEA------HYVLGIEILRDRSRGILGLSQKTYIDRILKRFN 645 YKAR+V +G +Q +TYS ++T+ + +I + + + N+ + +D+ AFL L E++Y+ P DR +V KL +++YGLKQ+ ++W + G ++N+ +Y + K ++ L E L +F++K G +LG++++ ++ G + L+ K++I+R+ K++N Sbjct: 1337 YKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPH-----DRRCVV-KLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY--QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYN 1533
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY4B-H PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 51/210 (24.29%), Postives = 103/210 (49.05%), Query Frame = 1 Query: 46 YKARLVAKGFSQREGIDFTETYSPVSTK----DSFRIIMALVAHFNLELHQMDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYLRVSGSKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEA------HYVLGIEILRDRSRGILGLSQKTYIDRILKRFN 645 YKAR+V +G +Q +TYS ++T+ + +I + + + N+ + +D+ AFL L E++Y+ P DR +V KL +++YGLKQ+ ++W + G ++N+ +Y + K ++ L E L +F++K G +LG++++ ++ G + L+ K++I+R+ K++N Sbjct: 1336 YKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPH-----DRRCVV-KLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY--QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYN 1532 The following BLAST results are available for this feature:
BLAST of CX290478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290478 ID=CX290478; Name=CX290478; organism=Citrus clementina; type=EST; length=683bpback to top |