CX290478

Overview
NameCX290478
Unique NameCX290478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 102/226 (45.13%), Postives = 146/226 (64.60%), Query Frame = 1
Query:    7 FQTKRDARGQVERYKARLVAKGFSQREGIDFTETYSPVSTKDSFRIIMALVAHFNLELHQMDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYL-RVSGSKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEAHYVLGIEILRDRSRGILGLSQKTYIDRILKRFNLQSCAPGKAPIS 681
            F+ K+D   ++ RYKARLV KGF Q++GIDF E +SPV    S R I++L A  +LE+ Q+DVKTAFL+G L E++YM QP+GF    +++MVCKL +S+YGLKQA RQWY+KF   + S  + +   D C+Y  R S +                 D  L+ + K  LS SFDMKDLG A  +LG++I+R+R+   L LSQ+ YI+R+L+RFN+++  P   P++
Sbjct:  861 FKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLA 1086          
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38
Identity = 89/226 (39.38%), Postives = 132/226 (58.41%), Query Frame = 1
Query:    7 FQTKRDARGQVERYKARLVAKGFSQREGIDFTETYSPVSTKDSFRIIMALVAHFNLELHQMDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYLRVSG--SKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEAHYVLGIEILRDRSRGILGLSQKTYIDRILKRFNLQSCAPGKAPI 678
            F  K +  G   RYKARLVA+GF+Q+  ID+ ET++PV+   SFR I++LV  +NL++HQMDVKTAFLNG+L E++YM  P G +  + +N VCKL ++IYGLKQA+R W+  F   +    F  ++VD+CIY+   G  ++                D   +   K+ L   F M DL E  + +GI I     +  + LSQ  Y+ +IL +FN+++C     P+
Sbjct:  941 FSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG-ISCNSDN-VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDK--IYLSQSAYVKKILSKFNMENCNAVSTPL 1162          
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 46/164 (28.05%), Postives = 72/164 (43.90%), Query Frame = 1
Query:  187 MDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYLRVSGSKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEAHYVLGIEILRDRSRGILGLSQKTYIDRILKRFNLQSCAPGKAPI 678
            MDV TAFLN ++ E +Y+ QP GFV     + V +L   +YGLKQA   W    ++ +   GF  +  +  +Y R +                      +    KQ L+  + MKDLG+    LG+ I    S G + LS + YI +      + +    + P+
Sbjct:    1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNI-HQSSNGDITLSLQDYIAKAASESEINTFKLTQTPL 163          
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: YJ41B_YEAST (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY4B-J PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 51/210 (24.29%), Postives = 103/210 (49.05%), Query Frame = 1
Query:   46 YKARLVAKGFSQREGIDFTETYSPVSTK----DSFRIIMALVAHFNLELHQMDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYLRVSGSKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEA------HYVLGIEILRDRSRGILGLSQKTYIDRILKRFN 645
            YKAR+V +G +Q       +TYS ++T+    +  +I + +  + N+ +  +D+  AFL   L E++Y+  P      DR  +V KL +++YGLKQ+ ++W       +   G ++N+    +Y   +  K               ++   L E    L  +F++K  G          +LG++++ ++  G + L+ K++I+R+ K++N
Sbjct: 1337 YKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPH-----DRRCVV-KLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY--QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYN 1533          
BLAST of CX290478 vs. ExPASy Swiss-Prot
Match: YH41B_YEAST (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 51/210 (24.29%), Postives = 103/210 (49.05%), Query Frame = 1
Query:   46 YKARLVAKGFSQREGIDFTETYSPVSTK----DSFRIIMALVAHFNLELHQMDVKTAFLNGSLSEDVYMVQPDGFVETDRENMVCKLKRSIYGLKQASRQWYLKFHDIVTSYGFQENAVDQCIYLRVSGSKXXXXXXXXXXXXXXXNDTNLLLETKQMLSCSFDMKDLGEA------HYVLGIEILRDRSRGILGLSQKTYIDRILKRFN 645
            YKAR+V +G +Q       +TYS ++T+    +  +I + +  + N+ +  +D+  AFL   L E++Y+  P      DR  +V KL +++YGLKQ+ ++W       +   G ++N+    +Y   +  K               ++   L E    L  +F++K  G          +LG++++ ++  G + L+ K++I+R+ K++N
Sbjct: 1336 YKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPH-----DRRCVV-KLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLY--QTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLKSFINRMDKKYN 1532          
The following BLAST results are available for this feature:
BLAST of CX290478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
POLX_TOBAC4.650e-5145.13Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME1.188e-3839.38Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
YCH4_YEAST1.238e-1128.05Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
YJ41B_YEAST2.758e-1124.29Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomy... [more]
YH41B_YEAST2.758e-1124.29Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionC02024F04SK IF1 Citrus clementina cDNA clone C02024F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290478 ID=CX290478; Name=CX290478; organism=Citrus clementina; type=EST; length=683bp
ATGGGTTTTCAAACCAAGAGAGATGCCAGAGGTCAGGTAGAGAGGTACAA
GGCCAGGCTTGTGGCTAAGGGTTTCAGTCAAAGAGAAGGCATTGATTTCA
CTGAAACGTACTCTCCTGTTTCTACCAAAGACTCTTTTCGTATTATCATG
GCATTGGTAGCTCATTTCAATTTAGAATTGCATCAGATGGATGTGAAGAC
AGCTTTTCTCAATGGAAGCTTATCTGAAGATGTGTACATGGTGCAACCTG
ATGGTTTTGTTGAGACTGATAGAGAAAACATGGTGTGTAAGCTTAAAAGG
TCAATTTATGGACTTAAACAAGCATCCAGACAGTGGTATTTGAAATTTCA
CGATATTGTCACCTCTTATGGGTTCCAGGAGAATGCCGTTGATCAGTGTA
TATACTTGAGAGTCAGTGGGAGCAAGTATATCATTTTGGTGCTTTATGTG
GATGATATCTTGCTCGCTGCTAATGACACTAATTTGTTACTTGAGACAAA
GCAAATGTTGTCATGCAGCTTTGATATGAAGGATCTTGGTGAAGCCCATT
ATGTATTAGGGATAGAGATTCTTCGTGATAGATCTAGAGGAATTCTAGGC
TTGTCTCAAAAGACTTACATTGATCGTATTTTGAAAAGGTTCAATTTGCA
GTCTTGTGCTCCTGGGAAAGCTCCAATTTCGAA
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