CX290481

Overview
NameCX290481
Unique NameCX290481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.705e-40
Identity = 78/130 (60.00%), Postives = 100/130 (76.92%), Query Frame = 2
Query:   14 MAPISVGDPLSEGPLAYFDKINQLLTVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEKRLDTRSRNF 403
            MAPI+VGD + +G +++FD+ +QL T SVHS+AA KKVILFGVPGAFTPTC++ +V GFIEK +EL SKGV EI+C + NDPF M A   T+P+NK + F+ADGS +YT  LG +LDL +K L  RSR F
Sbjct:    1 MAPIAVGDVVPDGTISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRF 130          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.909e-40
Identity = 78/130 (60.00%), Postives = 101/130 (77.69%), Query Frame = 2
Query:   14 MAPISVGDPLSEGPLAYFDKINQLLTVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEKRLDTRSRNF 403
            MAPI+VGD + +G +++FD+ +QL TVSVHSIAA KKVILFGVPGAFTPTC++++V GFI K +EL SKG+ EI+C + NDPF M A   T+P+NK + F+ADGS +YT  LG +LDL +K L  RSR F
Sbjct:    1 MAPITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRF 130          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.462e-39
Identity = 77/130 (59.23%), Postives = 100/130 (76.92%), Query Frame = 2
Query:   14 MAPISVGDPLSEGPLAYFDKINQLLTVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEKRLDTRSRNF 403
            MAPI+VGD + +G +++FD+ +QL TVSVHSIAA KKVILFGVPGAFTPTC++++V GFI K +EL SKG+ EI+C + NDPF M A   T+ +NK + F+ADGS +YT  LG +LDL +K L  RSR F
Sbjct:    1 MAPITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRF 130          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.548e-36
Identity = 72/130 (55.38%), Postives = 95/130 (73.08%), Query Frame = 2
Query:   14 MAPISVGDPLSEGPLAYFDKINQLLTVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEKRLDTRSRNF 403
            MAP++VGD L +G L +FD  ++L  VSVH +AA KKV+LFGVPGAFTPTC+  +V GFI + ++L +KGV +IL ++ NDPF M A   ++P+NK + FLADG   YT ALG +LDL+EK L  RSR F
Sbjct:    1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRF 130          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.806e-35
Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 2
Query:   14 MAPISVGDPLSEGPLAYFDKINQLLTVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEKRLDTRSRNF 403
            MAPI VGD + +G +++FD  +QL TVSVHS+AA KKVILFGVPGAF PTC++N+V GFIEK +EL S GV EI+C++ +DPF + AC+    +NK + F+ DGS +Y   LG +L++ +K L  RSR F
Sbjct:    1 MAPIDVGDFVPDGSISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACS----ENKHVKFVEDGSGEYIQLLGLELEVKDKGLGVRSRGF 126          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.237e-24
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 2
Query:   17 APISVGDPLSEGPLAYFD-KINQLLTVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEK--RLDTRSRNF 403
            A ISVGD L +  L+Y D     + TV+V S+ A KK ILF VPGAFTPTC+  +V GF+ K  EL SKG+  I CI+ ND F M A       N  +  L+DG+ ++T  LG +LDL +K   L  RSR +
Sbjct:   71 ASISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRY 202          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.922e-24
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 2
Query:   17 APISVGDPLSEGPLAYFDKIN-QLLTVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEK--RLDTRSRNF 403
            A I+VGD L +  L+YFD  + +L TV+V  + A KKV+LF VPGAFTPTCT  +V GF+ K  EL +KGV  + C++ ND F M A   +      +  L+DG+ +   A+G +LDL++K   L  RSR +
Sbjct:   69 ATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRY 200          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.220e-23
Identity = 58/134 (43.28%), Postives = 86/134 (64.18%), Query Frame = 2
Query:   14 MAPISVGDPLSEGPLAYFDKIN-QLLTVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFP-DNKTMTFLADGSAKYTPALGFDLDLTEK--RLDTRSRNF 403
            +A I+VGD L +  L+YFD  + +L TV+V  + A +K +LF VPGAFTPTC+  ++ GFIEK  EL++KGV  I C++ ND F M A   +    +  +  L+DG+ + T ALG ++DL++K   L  RSR +
Sbjct:   60 VATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRY 193          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: MALF3_MALFU (Putative peroxiredoxin (Fragment) OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.522e-16
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  101 HSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEKRLDTRSRNF 403
            H     KKV++  VPGAFTPTCT N+V  ++EK+ EL SKGV E++ I+ NDPF ++A   T      +TF  D + +++      LDL+ K +  R+  +
Sbjct:   35 HERWKGKKVVIVAVPGAFTPTCTANHVPPYVEKIQELKSKGVDEVVVISANDPFVLSAWGITEHAKDNLTFAQDVNCEFSKHFNATLDLSSKGMGLRTARY 135          
BLAST of CX290481 vs. ExPASy Swiss-Prot
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.361e-13
Identity = 33/105 (31.43%), Postives = 55/105 (52.38%), Query Frame = 2
Query:   89 TVSVHSIAASKKVILFGVPGAFTPTCTLNYVTGFIEKVDELNSKGVHEILCITFNDPFEMNACTNTFPDNKTMTFLADGSAKYTPALGFDLDLTEKRLDTRSRNF 403
            T  +  I   KKV++FG+PGA+T  C+  +V  +   +D+  +KG+  ++C++ NDPF +N           + F  D   K+  +LG D DL+   L  RS  +
Sbjct:   64 TTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERW 168          
The following BLAST results are available for this feature:
BLAST of CX290481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PRX2B_ARATH1.705e-4060.00Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2C_ARATH2.909e-4060.00Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRX2D_ARATH2.462e-3959.23Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2C_ORYSJ2.548e-3655.38Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PRX2A_ARATH4.806e-3554.62Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]
PRX2E_ARATH2.237e-2446.21Peroxiredoxin-2E, chloroplastic OS=Arabidopsis tha... [more]
PR2E1_ORYSJ2.922e-2443.94Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PR2E2_ORYSJ4.220e-2343.28Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa ... [more]
MALF3_MALFU8.522e-1639.60Putative peroxiredoxin (Fragment) OS=Malassezia fu... [more]
PRX2F_ARATH1.361e-1331.43Peroxiredoxin-2F, mitochondrial OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC02024F08SK IF1 Citrus clementina cDNA clone C02024F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290481 ID=CX290481; Name=CX290481; organism=Citrus clementina; type=EST; length=433bp
ATTCTATCTCTAAATGGCTCCTATCTCAGTCGGTGACCCCTTGTCGGAGG
GCCCTCTCGCTTACTTCGACAAAATAAATCAATTGCTGACTGTGTCCGTA
CACTCGATCGCTGCCAGTAAAAAGGTCATCCTCTTTGGCGTCCCCGGTGC
TTTCACTCCTACTTGCACTTTGAATTATGTGACTGGATTCATCGAGAAAG
TTGATGAGCTGAATTCCAAAGGCGTCCATGAAATTCTCTGCATAACCTTC
AATGACCCTTTTGAGATGAACGCATGTACCAACACATTTCCTGACAACAA
GACCATGACTTTCCTGGCTGATGGCTCTGCCAAATACACCCCTGCTTTGG
GGTTTGACCTTGACCTCACCGAGAAAAGACTTGACACCCGGTCCAGGAAT
TTTGCTCTCTTGCTTAATAACCTCAAGGCGAAA
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