CX290489

Overview
NameCX290489
Unique NameCX290489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290489_ssr143 microsatellite CX290489_ssr143:143..154. BLAST: Citrus ESTs to Prunus persica proteins V1
CX290489_ssr170 microsatellite CX290489_ssr170:170..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: U727_PICSI (UPF0727 protein WS02710_H03 OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 140
            F DDRCANIFEALVGTLRAAKKRK +TYDGELLLQGVHDNVEI L
Sbjct:   36 FSDDRCANIFEALVGTLRAAKKRKVVTYDGELLLQGVHDNVEIVL 80          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: U727_ORYSJ (UPF0727 protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 140
            F+DDRCANIFEALVGTLRAAKKRK + YDGELLLQG HDNVEITL
Sbjct:   34 FNDDRCANIFEALVGTLRAAKKRKIVKYDGELLLQGAHDNVEITL 78          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: U727_ORYSI (UPF0727 protein OS=Oryza sativa subsp. indica GN=OsI_012692 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 140
            F+DDRCANIFEALVGTLRAAKKRK + YDGELLLQG HDNVEITL
Sbjct:   34 FNDDRCANIFEALVGTLRAAKKRKIVKYDGELLLQGAHDNVEITL 78          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: U727_ARATH (UPF0727 protein At4g33640 OS=Arabidopsis thaliana GN=At4g33640 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.335e-15
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITLK 143
            F+DDRCANIFEALVGTLRAAKKRK + ++GELLLQGVHD VEITL+
Sbjct:   34 FNDDRCANIFEALVGTLRAAKKRKIVAFEGELLLQGVHDKVEITLR 79          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: U727_THEHA (UPF0727 protein ST45-2 OS=Thellungiella halophila PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITLK 143
            F+DDRCANIFEALVGTLRAAKKRK + + GELLLQGVHD VEITL+
Sbjct:   34 FNDDRCANIFEALVGTLRAAKKRKIVAFPGELLLQGVHDKVEITLR 79          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: CF115_SALSA (UPF0727 protein C6orf115 homolog OS=Salmo salar PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.883e-15
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 140
            F+DDRCANIFEALVGTLRAAK++K + ++GELLLQGVHDNV+ITL
Sbjct:   34 FNDDRCANIFEALVGTLRAAKRKKIIAFEGELLLQGVHDNVDITL 78          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: CF115_XENLA (UPF0727 protein C6orf115 homolog OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.624e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 140
            F DD+CAN+FEALVGTL+AAKKRK +TY GELLLQGVHDNV+I L
Sbjct:   34 FSDDKCANLFEALVGTLKAAKKRKIITYQGELLLQGVHDNVDIVL 78          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: CF115_XENTR (UPF0727 protein C6orf115 homolog OS=Xenopus tropicalis PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.651e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 140
            F DD+CAN+FEALVGTL+AAKKRK +TY GELLLQGVHDNV+I L
Sbjct:   34 FSDDKCANLFEALVGTLKAAKKRKIVTYQGELLLQGVHDNVDIVL 78          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: CF115_DANRE (UPF0727 protein C6orf115 homolog OS=Danio rerio GN=si:dkey-34f16.3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.517e-14
Identity = 33/45 (73.33%), Postives = 43/45 (95.56%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 140
            F+DD+CAN+FEALVGTL+AAK++K +T+DGELLLQGVHDNV++ L
Sbjct:   34 FNDDQCANLFEALVGTLKAAKRKKVITFDGELLLQGVHDNVDVVL 78          
BLAST of CX290489 vs. ExPASy Swiss-Prot
Match: CF115_MOUSE (UPF0727 protein C6orf115 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.293e-14
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 3
Query:    6 FHDDRCANIFEALVGTLRAAKKRKFLTYDGELLLQGVHDNVEITL 140
            F DDRCAN+FEALVGTL+AAK+RK +TY GELLLQGVHD+V+I L
Sbjct:   34 FQDDRCANLFEALVGTLKAAKRRKIVTYAGELLLQGVHDDVDIVL 78          
The following BLAST results are available for this feature:
BLAST of CX290489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
U727_PICSI1.207e-1691.11UPF0727 protein WS02710_H03 OS=Picea sitchensis PE... [more]
U727_ORYSJ2.059e-1688.89UPF0727 protein OS=Oryza sativa subsp. japonica GN... [more]
U727_ORYSI2.059e-1688.89UPF0727 protein OS=Oryza sativa subsp. indica GN=O... [more]
U727_ARATH1.335e-1582.61UPF0727 protein At4g33640 OS=Arabidopsis thaliana ... [more]
U727_THEHA2.973e-1582.61UPF0727 protein ST45-2 OS=Thellungiella halophila ... [more]
CF115_SALSA3.883e-1580.00UPF0727 protein C6orf115 homolog OS=Salmo salar PE... [more]
CF115_XENLA6.624e-1580.00UPF0727 protein C6orf115 homolog OS=Xenopus laevis... [more]
CF115_XENTR8.651e-1580.00UPF0727 protein C6orf115 homolog OS=Xenopus tropic... [more]
CF115_DANRE2.517e-1473.33UPF0727 protein C6orf115 homolog OS=Danio rerio GN... [more]
CF115_MOUSE4.293e-1477.78UPF0727 protein C6orf115 homolog OS=Mus musculus P... [more]

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Properties
Property NameValue
Genbank descriptionC02024G04SK IF1 Citrus clementina cDNA clone C02024G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290489 ID=CX290489; Name=CX290489; organism=Citrus clementina; type=EST; length=353bp
GAGGATTTCATGATGATAGGTGCGCGAACATATTTGAGGCACTTGTTGGG
ACACTGAGAGCTGCAAAGAAACGTAAATTTCTTACATATGATGGTGAGCT
TCTCTTACAAGGAGTCCACGATAATGTTGAAATTACCCTCAAACCACCAC
CACCACAACCATTGGCGGTAGCAGCAGCAGCTGAGTCCTAGTTAACTGCC
AAATATTTGGTATTGCTTTTACCAGATCTTCCATAAATCCCTTTATCTTC
ATTAATTGTGTTGTGTGTCTACTGTGATTGTCTTACATTTGAACCTTGGC
TTGCCTTTTAAATCATTTCTCTAAAAGAGCTTATGCAAAAAAAAAAAAAA
AAA
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