CX290494

Overview
NameCX290494
Unique NameCX290494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig155 contig Ccv1_Contig155:186..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290494 vs. ExPASy Swiss-Prot
Match: CFI_EUSGR (Chalcone--flavonone isomerase OS=Eustoma grandiflorum GN=CHI PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 47/156 (30.13%), Postives = 75/156 (48.08%), Query Frame = -3 
Query:  215 IKFTAMESTLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFLRIVVIKEIKGSQYGVQLESAVRDRLAGADKYXXXXESALEKIVEFFQSKYFKK-DSVIAYHFPATSPTAEIVFTSEGKEDSKIKVENANVVEMIKKWYLGGARGVSP 676
            +KFTA+   LD   +  L  +WKGK    LA   DFF  +++ P EKF ++ +I  + G QY  ++      +   A  Y      A+EK ++ F+ + F   DS++  H P  S T       +  E S   +EN  + E + +  + G +GVSP
Sbjct:   47 VKFTAIGIYLDETAIPWLAGKWKGKTAEELADSVDFFADIITGPFEKFTQVTLILPLTGQQYSGKVSENCTAQWKAAGVYTPADGKAIEKFLQVFEPQSFSPGDSILFMHSP-ESLTISFGKAGDIPETSNAVIENKKLSEAVIESVI-GEKGVSP 200
The following BLAST results are available for this feature:
BLAST of CX290494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CFI_EUSGR2.075e-1130.13Chalcone--flavonone isomerase OS=Eustoma grandiflo... [more]
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Properties
Property NameValue
Genbank descriptionC02024G09SK IF1 Citrus clementina cDNA clone C02024G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290494 ID=CX290494; Name=CX290494; organism=Citrus clementina; type=EST; length=678bp
GAGGTTTTTTCTTTTTTTTTTCTTGAAGGACCTTAGCAAAGCAAATTTTC
ATTAAAATAGAAGCATGGGTTGCGGGGTAAACACGTCATTCAAATTGCAC
AAATTTACAGCAATTCCAAAACCCAAGTGAAGAAGCACTTTTATTAGAAA
GCGCAGAGCTGCTTCATTTTGATAACTCAGCTGAGAGAGTATTGGCTAGA
GATGATGTTGTTGTAGGAGACACTCCCCTTGCTCCACCCAAGTACCATTT
CTTGATCATCTCAACCACATTCGCATTCTCCACTTTGATTTTTGAGTCCT
CCTTTCCTTCACTTGTAAACACTATCTCAGCAGTAGGGGATGTTGCCGGA
AAATGATAAGCAATCACAGAGTCCTTCTTAAAATACTTGGATTGGAAGAA
TTCAACGATTTTCTCAAGGGCAGATTCTTCCTCTTCTTCATATTTGTCAG
CTCCGGCCAATCTGTCCCTCACCGCACTTTCTAACTGAACCCCATATTGT
GACCCCTTGATCTCCTTGATCACAACAATTCTCAAAAATTTCTCTACTGG
AGCAGAGACAAGAGCATCAAAGAAGTCATCATCTTGTGCAAGGGAACTTC
CCTGTTTGCCCTTCCACTGTTGCAAGTGACTCAAAATTTCAGGATCCAAA
GTAGACTCCATTGCCGTGAACTTGATTT
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