CX290501

Overview
NameCX290501
Unique NameCX290501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3354 contig Ccv1_Contig3354:713..1464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_ARATH (V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.501e-56
Identity = 107/126 (84.92%), Postives = 120/126 (95.24%), Query Frame = 2
Query:  257 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVA 634
            MAGRA IP ++SALIAMIADEDTV GFL+AGVGNVD+RRKTNYLIVDSKTTV+ IEDAFKEF+ ++DIAI+L+SQY+ANMIRFLVDSYNKP+PAILEIPSKDHPYDPAHDSVLSRVK LFSAESV+
Sbjct:    1 MAGRATIPARNSALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFKEFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVS 126          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_DICDI (V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.511e-32
Identity = 66/112 (58.93%), Postives = 88/112 (78.57%), Query Frame = 2
Query:  290 SALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 625
            +AL+A+I DED VTGFLLAGVG  D ++  N+L+VDSKT+   IE AFK FTT+ DIAI++I+Q VA+ IR+L+D Y++ IP ILEIPSKDHPYDP  DSV+ +VK +  ++
Sbjct:    9 TALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAIIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKMTGSD 120          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_RAT (V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.397e-32
Identity = 64/125 (51.20%), Postives = 91/125 (72.80%), Query Frame = 2
Query:  257 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 631
            MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F+AE +
Sbjct:    1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_MOUSE (V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.397e-32
Identity = 64/125 (51.20%), Postives = 91/125 (72.80%), Query Frame = 2
Query:  257 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 631
            MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R K +F+AE +
Sbjct:    1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_CAEEL (Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.796e-32
Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = 2
Query:  296 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAE 625
            ++A+I DEDTV GFLL GVG ++  RK NYLIVD +TTV+ IE+AF  F  ++DIAI+LI+Q++A MIR+ VD++ + IPA+LEIPSK+ PYDP+ DS+L+R + LF+ E
Sbjct:    9 ILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_BOVIN (V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.796e-32
Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 2
Query:  257 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 631
            MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R + +F+AE +
Sbjct:    1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_HUMAN (V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.279e-31
Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 2
Query:  257 MAGRAQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 631
            MAGR +       LIA+I DEDTVTGFLL G+G ++  R  N+L+V+  TT+  IED F++F  ++DI I+LI+QY+A M+R  +D++ + IPA+LEIPSK+HPYD A DS+L R + +F+AE +
Sbjct:    1 MAGRGK-------LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_ANOGA (V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.564e-29
Identity = 60/125 (48.00%), Postives = 83/125 (66.40%), Query Frame = 2
Query:  269 AQIPTKSSALIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESVASGR 643
            A +      LI++I DEDT  GFLL GVG ++  R  N+++VD  T V  IED FK F  ++DI I+LI+Q  A +IR ++DS+  P PA+LEIPSKDHPYD + DS+L R K +F+ E + + R
Sbjct:    2 ALLSAMKGKLISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILINQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_XENLA (V-type proton ATPase subunit F (Fragment) OS=Xenopus laevis GN=atp6s14 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.324e-28
Identity = 55/109 (50.46%), Postives = 82/109 (75.23%), Query Frame = 2
Query:  305 MIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 631
            +I DEDTVTGFLL G+G ++  RK N+L+V+ +T+V  IE+ F+ F  ++DI I+LI+Q++A MIR ++D++   IPA+LEIPSK+HPYD   DS+L R K +F+ E +
Sbjct:    1 VIGDEDTVTGFLLGGIGELNKNRKPNFLVVEKETSVTEIEETFRSFLNRDDIGIILINQFIAEMIRHVIDTHTISIPAVLEIPSKEHPYDATKDSILRRAKGMFTMEDL 109          
BLAST of CX290501 vs. ExPASy Swiss-Prot
Match: VATF_MANSE (V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.729e-28
Identity = 54/112 (48.21%), Postives = 81/112 (72.32%), Query Frame = 2
Query:  296 LIAMIADEDTVTGFLLAGVGNVDLRRKTNYLIVDSKTTVKAIEDAFKEFTTKEDIAIVLISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSVLSRVKNLFSAESV 631
            LI++I DEDT  GFLL G+G ++  R  N+++VD  T V  IE+ FK F  ++DI I+LI+Q VA ++R ++D++  P+P++LEIPSKDHPYD + DS+L R K +F+ E +
Sbjct:   11 LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFVKRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAKGMFNPEDL 122          
The following BLAST results are available for this feature:
BLAST of CX290501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF_ARATH1.501e-5684.92V-type proton ATPase subunit F OS=Arabidopsis thal... [more]
VATF_DICDI1.511e-3258.93V-type proton ATPase subunit F OS=Dictyostelium di... [more]
VATF_RAT4.397e-3251.20V-type proton ATPase subunit F OS=Rattus norvegicu... [more]
VATF_MOUSE4.397e-3251.20V-type proton ATPase subunit F OS=Mus musculus GN=... [more]
VATF_CAEEL9.796e-3257.27Probable V-type proton ATPase subunit F OS=Caenorh... [more]
VATF_BOVIN9.796e-3250.40V-type proton ATPase subunit F OS=Bos taurus GN=AT... [more]
VATF_HUMAN1.279e-3150.40V-type proton ATPase subunit F OS=Homo sapiens GN=... [more]
VATF_ANOGA1.564e-2948.00V-type proton ATPase subunit F OS=Anopheles gambia... [more]
VATF_XENLA1.324e-2850.46V-type proton ATPase subunit F (Fragment) OS=Xenop... [more]
VATF_MANSE1.729e-2848.21V-type proton ATPase subunit F OS=Manduca sexta GN... [more]

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Properties
Property NameValue
Genbank descriptionC02024H04SK IF1 Citrus clementina cDNA clone C02024H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290501 ID=CX290501; Name=CX290501; organism=Citrus clementina; type=EST; length=752bp
GGATTCGGCCGAGGATCCCCATTTCCCTTCTGTTTCCAGACATCTTCTCG
ATCGTGAAAGAAGAGAACGTGACATTCACTCATACACACCTACGCCCACG
CTGCCGCTGCCGTCACTTCCGTTCAAGTGTGCCACTCTGCAACTTCTAGT
CGTTCTCGATTTGCTTCCTCGTTCCAGCTGTTGTCGTCTCTGCCATCGAA
GCCTCCGGCGTCGTTCGCCGTCGTCAGCCACACAAGTTCAATCAATTTAA
ATTTAAATGGCTGGCAGAGCTCAAATCCCTACCAAGAGTTCGGCCCTTAT
TGCCATGATTGCAGATGAGGATACTGTAACTGGATTTTTGCTGGCTGGAG
TGGGTAATGTTGATTTGCGGAGAAAAACAAACTATCTTATTGTTGATTCA
AAAACTACGGTGAAAGCAATTGAAGATGCATTCAAAGAGTTTACAACAAA
GGAAGACATTGCCATTGTTTTAATCAGTCAATACGTTGCGAACATGATAA
GGTTCTTAGTTGACAGCTACAACAAGCCAATTCCAGCAATATTGGAGATT
CCTTCTAAGGACCATCCGTATGACCCTGCTCATGATTCAGTTCTTTCACG
AGTGAAAAACCTCTTCTCTGCAGAGTCCGTTGCATCTGGAAGGCGTTGAT
GATTCCCGCAATGTTCCATTTATCAAATTGTAAGCATGATACTGATAAAA
GACTGTCAGCTCCGAATGAATTGCTTTTGTGCACATGGTTTTACACTTTG
CT
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