CX290520

Overview
NameCX290520
Unique NameCX290520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:426..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.027e-50
Identity = 100/126 (79.37%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVE 378
            R  ER RIE+AGGV+MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLE+D   ELLVLASDGLWDVVPNEDAVALA++ EEPE AARKLT+TAF+RGSADNITCIVV+F H  +    P++E
Sbjct:  235 RSDERKRIESAGGVIMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQSEEEPEAAARKLTDTAFSRGSADNITCIVVKFRH--DKTESPKIE 358          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.063e-47
Identity = 92/119 (77.31%), Postives = 103/119 (86.55%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNED 357
            R  ER RIE+AGGVVMWAGTWRVGGVLAMSRAFGNR+LKQFVVA+PEIQ+ E+D+  E L+LASDGLWDVVPNEDAV+L +  EEPE AARKLTETAF+RGS DNITCIVV+F H   D
Sbjct:  363 RSDERKRIESAGGVVMWAGTWRVGGVLAMSRAFGNRLLKQFVVADPEIQEQEIDDELEFLILASDGLWDVVPNEDAVSLVKIEEEPEAAARKLTETAFSRGSGDNITCIVVKFQHDKMD 481          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.876e-44
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 345
            R  ER RIENAGGVV+WAGTWRVGGVLAMSRAFGNR+LK FVVAEPEIQ+  V+E  E LVLASDGLWDVV NE+AV+LA+T + PE  ARKLTE A++RGSADNITCIVV+FHH
Sbjct:  245 RSDERKRIENAGGVVIWAGTWRVGGVLAMSRAFGNRLLKPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAKTEDLPESVARKLTEIAYSRGSADNITCIVVQFHH 359          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42
Identity = 84/115 (73.04%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 RPRERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 345
            R  ER RIENAGGVV W+GTWRVGGVLAMSRAFGNR LK+FVVAEPE+Q+ E+D+  E L+LASDGLWDVV NE AVA  +  E PE AARKL E AF RGS DNITCIVV+F H
Sbjct:  249 RKDERKRIENAGGVVTWSGTWRVGGVLAMSRAFGNRFLKRFVVAEPEVQEQEIDDDLEFLILASDGLWDVVSNEHAVAFVKAEEGPEAAARKLAEIAFARGSTDNITCIVVKFLH 363          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.009e-38
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 339
            ER RIENAGG VMWAGTWRVGGVLA+SRAFG+R+LKQ+VVA+PEIQ+ ++D+  E L+LASDGLWDV  NE+AVA+ +  E+PE + +KL   A  RGSADNITC+VVRF
Sbjct:  170 ERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDDSLEFLILASDGLWDVFSNEEAVAVVKEVEDPEESTKKLVGEAIKRGSADNITCVVVRF 279          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.623e-38
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 339
            ER RIENAGG VMWAGTWRVGGVLA+SRAFG+R+LKQ+VVA+PEIQ+ ++D+  E L+LASDGLWDV  NE AVA+ +  E+PE +A+KL   A  RGSADNITC+VVRF
Sbjct:  170 ERERIENAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDDTLEFLILASDGLWDVFSNEAAVAMVKEVEDPEDSAKKLVGEAIKRGSADNITCVVVRF 279          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.623e-38
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 339
            ER RIE+AGG VMWAGTWRVGGVLA+SRAFG+R+LKQ+VVA+PEIQ+ +VD   E L+LASDGLWDVV NE+AV + +  E+PE  A++L   A+ RGSADNITC+VVRF
Sbjct:  170 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIKAIEDPEEGAKRLMMEAYQRGSADNITCVVVRF 279          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.461e-37
Identity = 72/112 (64.29%), Postives = 92/112 (82.14%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 345
            ER RIE+AGG VMWAGTWRVGGVLA+SRAFG+++LKQ+VV +PEI++  +D   E L+LASDGLWDVV NE+AV + R+  +PE AA+KL + A+ R S+DNITC+VVRF H
Sbjct:  163 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLH 274          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.439e-37
Identity = 77/125 (61.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF----HHVNEDPAEPE 372
            ER RIE+AGG VMWAGTWRVGGVLA+SRAFG+++LKQ+VVA+PEI++  VD   E L+LASDGLWDVV NE+AVA+ +   + E AA+KL + A  RGSADNITC+VVRF    +H+ E P   +
Sbjct:  201 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVKPILDSEQAAKKLLQEASQRGSADNITCLVVRFLEQENHLPERPTNDQ 325          
BLAST of CX290520 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.470e-36
Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 1
Query:   10 ERMRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 339
            ER RIE+AGG VMWAGTWRVGGVLA+SRAFG+++LKQ+VVA+PEI++  VD   E L+LASDGLWDVV N++AV + R  ++PE AA++L + A+ RGSADNIT ++VRF
Sbjct:  219 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVRPIQDPEQAAKRLLQEAYQRGSADNITVVIVRF 328          
The following BLAST results are available for this feature:
BLAST of CX290520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
P2C76_ARATH1.027e-5079.37Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C52_ORYSJ1.063e-4777.31Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C13_ORYSJ1.876e-4477.39Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C07_ORYSJ1.756e-4273.04Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
P2C71_ARATH2.009e-3868.18Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C69_ARATH2.623e-3869.09Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C59_ARATH2.623e-3868.18Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C45_ORYSJ6.461e-3764.29Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C59_ORYSJ8.439e-3761.60Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C10_ORYSJ5.470e-3664.55Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC02025A12SK IF1 Citrus clementina cDNA clone C02025A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290520 ID=CX290520; Name=CX290520; organism=Citrus clementina; type=EST; length=678bp
CGGCCGAGGGAGCGGATGAGAATTGAAAATGCCGGAGGCGTTGTAATGTG
GGCAGGCACTTGGAGAGTAGGAGGTGTGCTAGCTATGTCTCGTGCTTTTG
GTAACCGCATGCTGAAGCAATTTGTCGTTGCGGAACCTGAGATCCAGGAC
CTTGAAGTAGATGAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGGACT
ATGGGATGTAGTACCCAATGAGGATGCTGTTGCACTTGCCCGAACAGGGG
AAGAACCTGAAATCGCAGCTCGGAAGTTAACGGAGACTGCTTTTACCCGA
GGCAGTGCTGACAACATAACGTGCATTGTAGTGAGATTCCACCACGTCAA
TGAAGATCCAGCCGAACCTGAAGTGGAGCAGGAGTAGGAATCTTCATTTA
TGTTGCATGGTGTAGGTTTATCGACCCTTTAGGCTGTAGATCATCTGGAA
ATCTGCACATGCATGGCTGAATGTGCATAGCAACAGGGAGGAAGGCGATT
TTTTTATTCATTGTTTCTTTTTTTTCCCCGCACCCCCCTAATTTGAACCT
TTCTGTATTGACTGCATATATTGAGTCTTGGTTCATTCCAGAATAACTAT
TCCTCTTCGCTCCATAATGTGGCCTGGTAATCTGTATGTCTAAATGCCCG
TTCTGGGTATTTCGGTCTTAAGTTATAA
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