CX290521

Overview
NameCX290521
Unique NameCX290521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290521_ssr292 microsatellite CX290521_ssr292:292..303. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10674 contig Ccv1_Contig10674:535..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290521 vs. ExPASy Swiss-Prot
Match: GBF1_ARATH (G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.932e-39
Identity = 98/202 (48.51%), Postives = 113/202 (55.94%), Query Frame = 3
Query:   30 KATSGSGNDGVSQXXXXXXXXXXXXXXXXXXQQEFARGKKGSFDKMLADXXXXXXXXXXXXXXXXXXXXXXXXATNLNIGMDLWNTSPAAAGAAKMRTNXXXXXXXXXXXXIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 635
            KA SGSGNDG S                   QQE    +K SF +MLAD                         TNLNIGMDLW++                               ++DERELKRQKRKQSNRESARRSRLRKQAECE+LQ RVE+LSNEN++LRDELQRLS EC+KL SENNSI+++L R+ G EAVANL
Sbjct:  129 KALSGSGNDGASHSDESVTAGSSDENDENANQQEQGSIRKPSFGQMLADASSQSTTGEIQGSVPMKPVAP---GTNLNIGMDLWSSQAGVP--------------------------VKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQRVLGAEAVANL 301          
BLAST of CX290521 vs. ExPASy Swiss-Prot
Match: CPRF3_PETCR (Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 59/91 (64.84%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  363 IMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCGPEAVANL 635
            ++PDQ + DERELKRQ+RKQSNRESARRSRLRKQA+ +ELQ R++ LS ENR LR  LQR+SE C ++TSEN+SIKE+L R  GP+ +  L
Sbjct:  185 MLPDQRVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISEACAEVTSENHSIKEELLRNYGPDGLTRL 275          
BLAST of CX290521 vs. ExPASy Swiss-Prot
Match: HBP1A_WHEAT (Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23
Identity = 65/125 (52.00%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  249 ATNLNIGMDLWN---TSPAAAGAAKMRTNXXXXXXXXXXXXIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDLSRLCG 614
            ATNLNIGMD W    +SP  A   K+ +                +QW  DERELK+QKRK SNRESARRSRLRKQAECEEL  R E L +EN +LR EL R+ +E E+L S+N S+K  L    G
Sbjct:  213 ATNLNIGMDYWGATGSSPVPAMRGKVPSGSARG-----------EQW--DERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKNTSLKAKLGESGG 324          
BLAST of CX290521 vs. ExPASy Swiss-Prot
Match: TAF1_TOBAC (Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.093e-19
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  372 DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 599
            + W+Q+ERELKR+KRKQSNRESARRSRLRKQAE EEL  RV++L+ EN  L+ E+ +L E  EKL  EN ++ E L
Sbjct:  186 EAWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENAALMERL 261          
BLAST of CX290521 vs. ExPASy Swiss-Prot
Match: GBF3_ARATH (G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 3
Query:  363 IMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 599
            + P+ W+Q+ERELKR++RKQSNRESARRSRLRKQAE EEL  +VE L+ EN  LR EL +L+E+ +KL   N ++ + L
Sbjct:  248 VPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANATLLDKL 326          
BLAST of CX290521 vs. ExPASy Swiss-Prot
Match: EMBP1_WHEAT (DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 53/119 (44.54%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  249 ATNLNIGMDLWNTSPAAA------GAAKMRTNXXXXXXXXXXXXIMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSI 587
            A NLNIGMD  + SP++        AA  ++N                    DERELKR++RKQSNRESARRSRLRKQ ECEEL  +V  L+  N  LR EL +L ++C+ + +EN  +
Sbjct:  209 APNLNIGMDPLSASPSSLVQGEVNAAASSQSNASLSQ--------------MDERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKTMETENKKL 313          
BLAST of CX290521 vs. ExPASy Swiss-Prot
Match: CPRF1_PETCR (Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  363 IMP-DQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKE 593
            +MP D W+ ++R+LKR++RKQSNRESARRSRLRKQAE EEL  +V++L+ EN  L+ E+ RL+   EKLT++N+ + E
Sbjct:  257 MMPNDSWLHNDRDLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTNDNSRLLE 334          
BLAST of CX290521 vs. ExPASy Swiss-Prot
Match: GBF2_ARATH (G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.235e-16
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  366 MPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSENNSIKEDL 599
            +P  W  +E+E+KR+KRKQSNRESARRSRLRKQAE E+L  +V+ L  EN +LR +L +L+ E EKL  EN +I + L
Sbjct:  241 VPQPW--NEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLRSKLGQLNNESEKLRLENEAILDQL 316          
The following BLAST results are available for this feature:
BLAST of CX290521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GBF1_ARATH7.932e-3948.51G-box-binding factor 1 OS=Arabidopsis thaliana GN=... [more]
CPRF3_PETCR2.027e-2664.84Light-inducible protein CPRF3 OS=Petroselinum cris... [more]
HBP1A_WHEAT4.672e-2352.00Transcription factor HBP-1a OS=Triticum aestivum P... [more]
TAF1_TOBAC4.093e-1961.84Transcriptional activator TAF-1 (Fragment) OS=Nico... [more]
GBF3_ARATH6.981e-1958.23G-box-binding factor 3 OS=Arabidopsis thaliana GN=... [more]
EMBP1_WHEAT1.008e-1744.54DNA-binding protein EMBP-1 OS=Triticum aestivum PE... [more]
CPRF1_PETCR1.720e-1756.41Common plant regulatory factor 1 OS=Petroselinum c... [more]
GBF2_ARATH4.235e-1656.41G-box-binding factor 2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC02025B01SK IF1 Citrus clementina cDNA clone C02025B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290521 ID=CX290521; Name=CX290521; organism=Citrus clementina; type=EST; length=637bp
CTCCAGGAGGTAAGGCTGGAGAGATTGTAAAGGCAACTTCTGGTTCTGGG
AATGACGGTGTCTCTCAAAGTGCTGAAAGTGGTAGTGACGGTTCATCTGA
TGCGAGTGATGAGAATGGTAACCAGCAGGAGTTTGCTAGGGGTAAGAAAG
GAAGCTTTGACAAGATGCTTGCAGATGCCAACACGGAGAATAACACAGCG
GAAGCTGTTCCAGGATCAGTGCCCGGGAAGCCTGTAGTCTCAATGCCTGC
AACTAATCTCAATATTGGCATGGATTTGTGGAATACATCCCCTGCTGCTG
CTGGAGCTGCAAAAATGAGAACAAATCCATCTGGGGCCTCACCAGCAGTT
GCTCCCGCTGGCATAATGCCCGATCAATGGATTCAAGATGAACGTGAATT
GAAAAGACAGAAAAGGAAGCAATCTAATAGGGAGTCAGCCAGAAGGTCAA
GGTTACGCAAGCAGGCGGAATGTGAGGAGCTACAGGCCAGAGTGGAGACT
TTGAGCAATGAGAATCGCAACCTTAGAGATGAGTTACAGAGGCTTTCTGA
GGAATGCGAGAAGCTTACATCTGAAAATAATTCCATTAAGGAAGACTTAT
CTCGGTTGTGTGGACCAGAGGCAGTTGCTAATCTTGA
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