CX290525

Overview
NameCX290525
Unique NameCX290525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290525 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.716e-47
Identity = 97/181 (53.59%), Postives = 127/181 (70.17%), Query Frame = 3
Query:    6 PRVSVTGKITTKVDVFSFGVVLMELLTGLMALDESRPEERQYLAAWFWNIKSDKE-KLRAAIDPILGPNDDTFETFWTIAELAGHCTSREPSQRPDMGHAVNVLAPLVEKWKPLDDEPEEYSGIDYSLPLNQMVKDWQEAEGK-DLS------YVSLEDSKSSIPARPTGFAESFTSADGR 524
            P  +VTG++TTKVDV+SFGV+LMEL+TG  +LDES+PEE  +L +WF  +  +KE   + AID  +  +++T  +  T+AELAGHC +REP QRPDMGHAVN+L+ LVE WKP D  PE+  GID  + L Q +K WQ  EG+ DL         SL++++ SIP RP GFAESFTS DGR
Sbjct:  762 PEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIHLVSWFKRMYINKEASFKKAIDTTIDLDEETLASVHTVAELAGHCCAREPYQRPDMGHAVNILSSLVELWKPSDQNPEDIYGIDLDMSLPQALKKWQAYEGRSDLESSTSSLLPSLDNTQMSIPTRPYGFAESFTSVDGR 942          
BLAST of CX290525 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 3
Query:    6 PRVSVTGKITTKVDVFSFGVVLMELLTGLMALDESRPEERQYLAAWFWNIKSDKEKLRAAIDPILGPNDDTFETFWTIAELAGHCTSREPSQRPDMGHAVNVLAPLVEKWKPLDDE 353
            P  ++TG+IT K DV+SFGVVL+ELLTG   +D + P+ +Q L  W    +  ++K++  IDP L  ND   +    +A +A  C   E   RP+M   V  L PL+   KP   E
Sbjct:  250 PEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWA-TPRLSEDKVKQCIDPKLN-NDFPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNS-KPAGPE 362          
BLAST of CX290525 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 42/133 (31.58%), Postives = 62/133 (46.62%), Query Frame = 3
Query:    6 PRVSVTGKITTKVDVFSFGVVLMELLTGLMALDESRPEERQYLAAWFWNIKSDKEKLRAAIDPILGPNDDTFETFWTIAELAGHCTSREPSQRPDMGHAVNVLAPLVEKWKPLDDEPEEYSGIDYSLPLNQMV 404
            P  +++G  T K DV++FGVV++ELLTG   LD SR    Q L  W      D + L   +DP L       ++    A++   C   EP  RP M   V  L  LV++   +     + +G  Y  P ++ V
Sbjct:  568 PEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDIDALSKMVDPSLNGMYPA-KSLSRFADIIALCIQPEPEFRPPMSEVVQQLVRLVQRASVVKRRSSDDTGFSYRTPEHEHV 699          
The following BLAST results are available for this feature:
BLAST of CX290525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TMK1_ARATH1.716e-4753.59Probable receptor protein kinase TMK1 OS=Arabidops... [more]
Y2197_ARATH3.993e-1238.79Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
SRF8_ARATH7.531e-1131.58Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC02025B05SK IF1 Citrus clementina cDNA clone C02025B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290525 ID=CX290525; Name=CX290525; organism=Citrus clementina; type=EST; length=664bp
TTCGGCCGAGGGTTTCAGTGACAGGAAAGATCACAACGAAAGTTGATGTT
TTTAGTTTTGGAGTTGTATTGATGGAGCTATTGACTGGGTTGATGGCTCT
AGATGAGAGCAGGCCTGAGGAAAGGCAGTACTTGGCTGCATGGTTTTGGA
ACATAAAGTCAGACAAGGAGAAGCTGAGGGCTGCCATAGACCCGATCCTA
GGGCCGAATGATGACACATTTGAGACTTTCTGGACCATTGCTGAACTGGC
TGGACACTGCACATCTAGAGAACCATCTCAACGGCCAGATATGGGTCATG
CGGTGAATGTACTGGCACCACTTGTTGAAAAATGGAAACCATTGGATGAC
GAACCAGAGGAATACAGCGGAATTGATTACAGTCTCCCTCTAAACCAAAT
GGTGAAAGACTGGCAGGAAGCAGAAGGTAAAGACTTAAGTTATGTGTCTC
TAGAAGACAGCAAAAGTAGTATACCAGCAAGACCAACTGGTTTCGCTGAG
TCTTTCACTTCTGCTGATGGTCGGTAAACGAGGTAATACTGGCTTCCTTT
CAGTCGTCCTTGGTAGATGTAGATAGCTTGCTCTAATTCTCCTGTTTGAG
AATTCAATGTCAATATGTTTTACTACCGTTGTAGTTAAGGTGATAAAGAT
GGAGACTCGATGCT
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