CX290526 | Citrus Genome Database

Overview


Name	CX290526
Unique Name	CX290526
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	734

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX290526 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 5.991e-20
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 1

Query:  250 AHFIPCARTADALHVVKLFSKEIVKLHGLPVTIVSDRDVKFVSYFWKTLWNTV----KFSSAFHLQTDGQTEAVNHSL 471
            AHFI   +T DA  ++ L  + I   HG P TI SDRDV+  +  ++ L   +      SSA H QTDGQ+E    +L
Sbjct: 1227 AHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTL 1304

HSP 2 Score: 44.669 bits (104), Expect = 5.991e-20
Identity = 27/82 (32.93%), Postives = 44/82 (53.66%), Query Frame = 2

Query:    5 ALVEDRFY*PSLRKDVAKIVSQCITPQLAKAKKHN*-GLDTPLAVPYSP*RGLCMDFVLGLPKTAHSHDSGFVVVDQYSKMA 247
            A +   +Y P L+  + + +  C+  QL K+ +    GL  PL +       + MDFV GLP T+++ +   VVVD++SK A
Sbjct: 1146 AKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRA 1227

HSP 3 Score: 40.4318 bits (93), Expect = 5.991e-20
Identity = 27/76 (35.53%), Postives = 35/76 (46.05%), Query Frame = 3

Query:  477 LLCCLVGGKPGNWDLVLPMPEFAYNNAVHRTTGKSPFMTVDGMSPCQPVDLVSIPHNSRRPEFASDFAPHMRELPL 704
            LL   V     NW + LP  EF YN+   RT GKSPF    G  P  P  + S    + R   A + A H++ L +
Sbjct: 1307 LLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPA-IKSDDEVNARSFTAVELAKHLKALTI 1381

[Close]

BLAST of CX290526 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 53.1434 bits (126), Expect = 7.755e-20
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 1

Query:  250 AHFIPCARTADALHVVKLFSKEIVKLHGLPVTIVSDRDVKFVSYFWKTLWNTV----KFSSAFHLQTDGQTEAVNHSL 471
            AHFI   +T DA  ++ L  + I   HG P TI SDRDV+  +  ++ L   +      SSA H QTDGQ+E    +L
Sbjct: 1201 AHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTL 1278

HSP 2 Score: 44.669 bits (104), Expect = 7.755e-20
Identity = 27/82 (32.93%), Postives = 44/82 (53.66%), Query Frame = 2

Query:    5 ALVEDRFY*PSLRKDVAKIVSQCITPQLAKAKKHN*-GLDTPLAVPYSP*RGLCMDFVLGLPKTAHSHDSGFVVVDQYSKMA 247
            A +   +Y P L+  + + +  C+  QL K+ +    GL  PL +       + MDFV GLP T+++ +   VVVD++SK A
Sbjct: 1120 AKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRA 1201

HSP 3 Score: 40.0466 bits (92), Expect = 7.755e-20
Identity = 24/65 (36.92%), Postives = 32/65 (49.23%), Query Frame = 3

Query:  510 NWDLVLPMPEFAYNNAVHRTTGKSPFMTVDGMSPCQPVDLVSIPHNSRRPEFASDFAPHMRELPL 704
            NW + LP  EF YN+   RT GKSPF    G  P  P  + S    + R   A + A H++ L +
Sbjct: 1292 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPA-IKSDDEVNARSFTAVELAKHLKALTI 1355

[Close]

BLAST of CX290526 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.741e-18
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1

Query:  247 LAHFIPCARTADALHVVKLFSKEIVKLHGLPVTIVSDRDVKFVSYFWKTLWN----TVKFSSAFHLQTDGQTEAVNHSL 471
            +A  +PC ++  A    ++F + ++   G P  I++D D  F S  WK   +     +KFS  +  QTDGQTE  N ++
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

HSP 2 Score: 46.2098 bits (108), Expect = 1.741e-18
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 2

Query:   20 RFY*PSLRKDVAKIVSQCITPQLAKAKKHN*-GLDTPLAVPYSP*RGLCMDFVLGLPKTAHSHDSGFVVVDQYSKMA 247
            RF    +RK + + V  C T Q+ K++ H   G   P+     P   L MDF+  LP+++  +++ FVVVD++SKMA
Sbjct:  940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMA 1015

HSP 3 Score: 35.8094 bits (81), Expect = 1.741e-18
Identity = 19/54 (35.19%), Postives = 28/54 (51.85%), Query Frame = 3

Query:  477 LLCCLVGGKPGNWDLVLPMPEFAYNNAVHRTTGKSPFMTVDGMSPC-QPVDLVS 635
            LL C+    P  W   + + + +YNNA+H  T  +PF  V   SP   P++L S
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPS 1148

[Close]

BLAST of CX290526 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.741e-18
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1

Query:  247 LAHFIPCARTADALHVVKLFSKEIVKLHGLPVTIVSDRDVKFVSYFWKTLWN----TVKFSSAFHLQTDGQTEAVNHSL 471
            +A  +PC ++  A    ++F + ++   G P  I++D D  F S  WK   +     +KFS  +  QTDGQTE  N ++
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

HSP 2 Score: 46.2098 bits (108), Expect = 1.741e-18
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 2

Query:   20 RFY*PSLRKDVAKIVSQCITPQLAKAKKHN*-GLDTPLAVPYSP*RGLCMDFVLGLPKTAHSHDSGFVVVDQYSKMA 247
            RF    +RK + + V  C T Q+ K++ H   G   P+     P   L MDF+  LP+++  +++ FVVVD++SKMA
Sbjct:  940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMA 1015

HSP 3 Score: 35.8094 bits (81), Expect = 1.741e-18
Identity = 19/54 (35.19%), Postives = 28/54 (51.85%), Query Frame = 3

Query:  477 LLCCLVGGKPGNWDLVLPMPEFAYNNAVHRTTGKSPFMTVDGMSPC-QPVDLVS 635
            LL C+    P  W   + + + +YNNA+H  T  +PF  V   SP   P++L S
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPS 1148

[Close]

BLAST of CX290526 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.741e-18
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1

Query:  247 LAHFIPCARTADALHVVKLFSKEIVKLHGLPVTIVSDRDVKFVSYFWKTLWN----TVKFSSAFHLQTDGQTEAVNHSL 471
            +A  +PC ++  A    ++F + ++   G P  I++D D  F S  WK   +     +KFS  +  QTDGQTE  N ++
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTV 1092

HSP 2 Score: 46.2098 bits (108), Expect = 1.741e-18
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 2

Query:   20 RFY*PSLRKDVAKIVSQCITPQLAKAKKHN*-GLDTPLAVPYSP*RGLCMDFVLGLPKTAHSHDSGFVVVDQYSKMA 247
            RF    +RK + + V  C T Q+ K++ H   G   P+     P   L MDF+  LP+++  +++ FVVVD++SKMA
Sbjct:  940 RFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMA 1015

HSP 3 Score: 35.8094 bits (81), Expect = 1.741e-18
Identity = 19/54 (35.19%), Postives = 28/54 (51.85%), Query Frame = 3

Query:  477 LLCCLVGGKPGNWDLVLPMPEFAYNNAVHRTTGKSPFMTVDGMSPC-QPVDLVS 635
            LL C+    P  W   + + + +YNNA+H  T  +PF  V   SP   P++L S
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPS 1148

The following BLAST results are available for this feature:

BLAST of CX290526 vs. ExPASy Swiss-Prot

BLAST of CX290526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
YI31B_YEAST	5.991e-20	39.74	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy...	[more]
YG31B_YEAST	7.755e-20	39.74	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy...	[more]
RTF23_SCHPO	1.741e-18	31.65	Retrotransposable element Tf2 155 kDa protein type...	[more]
RTF22_SCHPO	1.741e-18	31.65	Retrotransposable element Tf2 155 kDa protein type...	[more]
RTF21_SCHPO	1.741e-18	31.65	Retrotransposable element Tf2 155 kDa protein type...	[more]

Properties


Property Name	Value
Genbank description	C02025B06SK IF1 Citrus clementina cDNA clone C02025B06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX290526 ID=CX290526; Name=CX290526; organism=Citrus clementina; type=EST; length=734bp
GAGGGCTTTAGTTGAAGATAGATTCTATTAGCCTTCATTAAGAAAAGATG
TCGCCAAGATTGTGTCTCAGTGTATAACTCCTCAACTAGCTAAAGCTAAG
AAACATAATTGAGGGTTGGACACCCCACTGGCTGTGCCTTACAGTCCTTG
ACGAGGCTTATGCATGGATTTTGTCTTAGGATTGCCAAAAACTGCTCACA
GTCATGATTCTGGTTTTGTTGTGGTAGATCAATATTCTAAGATGGCCTGG
CCCATTTTATTCCTTGTGCTAGGACTGCTGATGCTTTGCATGTTGTGAAG
TTATTCTCTAAGGAGATTGTTAAATTGCATGGTCTGCCTGTTACCATAGT
GTCTGATAGGGATGTTAAATTTGTTAGCTATTTTTGGAAAACACTTTGGA
ATACCGTAAAATTTTCATCTGCTTTTCACCTACAAACTGATGGTCAAACT
GAGGCTGTTAACCATAGTTTGGGATACTGTTATGTTGTTTAGTAGGTGGT
AAGCCTGGTAATTGGGATCTTGTTCTTCCTATGCCTGAATTTGCTTATAA
TAATGCTGTCCACAGGACCACTGGAAAAAGCCCTTTTATGACTGTTGATG
GCATGTCACCATGTCAGCCTGTTGACCTTGTCTCTATACCACATAATTCT
CGCCGTCCTGAATTTGCCTCTGATTTTGCCCCACACATGCGAGAATTGCC
CCTTGTATGAAAATCATAACTGGCAGCTGATGCA