CX290528

Overview
NameCX290528
Unique NameCX290528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig298 contig Ccv1_Contig298:1..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_ARATH (COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2 PE=1 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 2.575e-102
Identity = 184/221 (83.26%), Postives = 195/221 (88.24%), Query Frame = 3
Query:   18 SDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            SDEE EEQDVDIENQYYNSKG+VET+PE AL+GFAEVV MEPEKA+WGFKALKQTVK+YYRLGKYKEMM+AY EMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN  LL+EFYQTTLKALEEAKNERLWFKTNLKLC IWFD+GEY RM+KILKELHKSCQ+EDGTDDQKKGSQLLEVYAIEIQ+YTET                 SAIPHPRIMG IRE
Sbjct:   15 SDEEQEEQDVDIENQYYNSKGMVETEPEEALSGFAEVVQMEPEKADWGFKALKQTVKIYYRLGKYKEMMEAYTEMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNTGLLQEFYQTTLKALEEAKNERLWFKTNLKLCNIWFDIGEYRRMTKILKELHKSCQKEDGTDDQKKGSQLLEVYAIEIQIYTETKDNKKLKQLYHKALAIKSAIPHPRIMGIIRE 235          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_XENLA (COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis GN=csn2 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.092e-68
Identity = 125/221 (56.56%), Postives = 165/221 (74.66%), Query Frame = 3
Query:   18 SDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            S++   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++LG Y EMM+ Y+++LTYI+SAVTRNYSEK IN+I+D++  S S+   LL+EFY+TTL AL++AKN+RLWFKTN KL K++ +  EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT                   SAIPHP IMG IRE
Sbjct:   19 SEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLGNYPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI--STSKQMDLLQEFYETTLDALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 237          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_RAT (COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 123/221 (55.66%), Postives = 165/221 (74.66%), Query Frame = 3
Query:   18 SDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            S++   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L  + EMM+ Y+++LTYI+SAVTRNYSEK IN+I+D++  S S+   LL+EFY+TTL+AL++AKN+RLWFKTN KL K++ +  EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT                   SAIPHP IMG IRE
Sbjct:   21 SEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI--STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_MOUSE (COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 123/221 (55.66%), Postives = 165/221 (74.66%), Query Frame = 3
Query:   18 SDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            S++   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L  + EMM+ Y+++LTYI+SAVTRNYSEK IN+I+D++  S S+   LL+EFY+TTL+AL++AKN+RLWFKTN KL K++ +  EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT                   SAIPHP IMG IRE
Sbjct:   21 SEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI--STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_HUMAN (COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 123/221 (55.66%), Postives = 165/221 (74.66%), Query Frame = 3
Query:   18 SDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            S++   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L  + EMM+ Y+++LTYI+SAVTRNYSEK IN+I+D++  S S+   LL+EFY+TTL+AL++AKN+RLWFKTN KL K++ +  EYG++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT                   SAIPHP IMG IRE
Sbjct:   21 SEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI--STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_DANRE (COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.588e-67
Identity = 122/221 (55.20%), Postives = 165/221 (74.66%), Query Frame = 3
Query:   18 SDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            S++   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK EWGFKALKQ +K+ ++L  + EMM+ Y+++LTYI+SAVTRNYSEK IN+I+D++  S S+   LL+EFY+TTL+AL++AKN+RLWFKTN KL K++ +  E+G++ KIL++LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT                   SAIPHP IMG IRE
Sbjct:   21 SEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI--STSKQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEFGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 239          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_DROME (COP9 signalosome complex subunit 2 OS=Drosophila melanogaster GN=alien PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 2.974e-66
Identity = 126/222 (56.76%), Postives = 163/222 (73.42%), Query Frame = 3
Query:   18 SDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            S++   E DVD+ENQYYNSK L E +P+ ALA F +V+ +E  EK EWGFKALKQ +K+ +RL  Y EMM  Y+++LTYIKSAVTRN+SEK IN+I+D++S   S+N +LL+ FY+TTL AL +AKN+RLWFKTN KL K++FD  ++ ++ KILK+LH+SCQ +DG DD KKG+QLLE+YA+EIQMYT                   SAIPHP IMG IRE
Sbjct:   21 SEDSNSEPDVDLENQYYNSKALKEEEPKAALASFQKVLDLENGEKGEWGFKALKQMIKINFRLCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYIS--TSKNMALLQNFYETTLDALRDAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRE 240          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_DICDI (COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum GN=csn2 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.293e-61
Identity = 112/219 (51.14%), Postives = 157/219 (71.69%), Query Frame = 3
Query:   27 EPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            + E + V+IENQYYNSKGL++     A+  + +VV +E  EK EWGFKALK+  KLY+R+G +  M++++++ L Y KS+ + NY EK IN+++D VS S +    ++++ +  TLK+L + KNER+WF+TNLKL K+ F+  EYGR++KIL++LHKSC+ EDGTDDQKKGSQL+++YA+EIQMYTET                 SAIPHPRIMG IRE
Sbjct:   25 DSESEGVEIENQYYNSKGLIDESIPDAIKSYEKVVDLENGEKGEWGFKALKKITKLYFRIGDFDNMLESFKKFLPYTKSSASSNYIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKSLLDTKNERVWFRTNLKLAKLLFEKAEYGRLAKILRDLHKSCELEDGTDDQKKGSQLVDIYALEIQMYTETKNNKKLKDLYKKALEIKSAIPHPRIMGIIRE 243          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_EMENI (COP9 signalosome complex subunit 2 OS=Emericella nidulans GN=csnB PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 8.380e-61
Identity = 107/221 (48.42%), Postives = 152/221 (68.78%), Query Frame = 3
Query:   24 EEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN--FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            ++ E  D+ IEN+YYN+K +   +PE A+  F  V A+E +K +WGFK LKQ +KL ++LG+Y + ++ YRE+LTY+KSAVTRNYSEK INN++D++   +     +  + EFY  TL + +   NERLW KTN+KL ++W +  EYG++SK ++ELH++CQREDG+DD  KG+ LLE+YA+EIQMY ET                 SA+PHP+IMG IRE
Sbjct:   24 DDDETGDIGIENKYYNAKQIKVDNPEEAIDEFLGVPALEQDKGDWGFKGLKQAIKLEFKLGRYSDAVEHYRELLTYVKSAVTRNYSEKSINNMLDYIEKGSDDEKAYQCMEEFYSLTLNSFQNTNNERLWLKTNIKLARLWLERREYGQLSKKVRELHRACQREDGSDDPSKGTYLLELYALEIQMYAETKNNKRLKALYQRALRVRSAVPHPKIMGIIRE 244          
BLAST of CX290528 vs. ExPASy Swiss-Prot
Match: CSN2_CAEEL (COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans GN=csn-2 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.893e-58
Identity = 114/224 (50.89%), Postives = 156/224 (69.64%), Query Frame = 3
Query:   21 DEEPEEQDVDIENQYYNSKGLVETDP-EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE---TXXXXXXXXXXXXXXXXXSAIPHPRIMGNIRE 680
            D+   E DVD+ENQYY +KGL      + A+  F +V+ +E EK EWGFKALKQ +K+ +   + ++M++ YR++LTYIKSAVT+NYSEK IN I+D++S   S+   LL+ FY+TTL AL++AKNERLWFKTN KL K++FD+ E+ ++ KI+K+L  SC+ E G +DQ+KG+QLLE+YA+EIQMYTE                     SAIPHP I+G IRE
Sbjct:   18 DDSGSEPDVDMENQYYTAKGLRSDGKLDEAIKSFEKVLELEGEKGEWGFKALKQMIKITFGQNRLEKMLEYYRQLLTYIKSAVTKNYSEKSINAILDYIS--TSRQMDLLQHFYETTLDALKDAKNERLWFKTNTKLGKLFFDLHEFTKLEKIVKQLKVSCKNEQGEEDQRKGTQLLEIYALEIQMYTEQKNNKALKWVYELATQAIHTKSAIPHPLILGTIRE 239          
The following BLAST results are available for this feature:
BLAST of CX290528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CSN2_ARATH2.575e-10283.26COP9 signalosome complex subunit 2 OS=Arabidopsis ... [more]
CSN2_XENLA1.092e-6856.56COP9 signalosome complex subunit 2 (Fragment) OS=X... [more]
CSN2_RAT1.577e-6755.66COP9 signalosome complex subunit 2 OS=Rattus norve... [more]
CSN2_MOUSE1.577e-6755.66COP9 signalosome complex subunit 2 OS=Mus musculus... [more]
CSN2_HUMAN1.577e-6755.66COP9 signalosome complex subunit 2 OS=Homo sapiens... [more]
CSN2_DANRE4.588e-6755.20COP9 signalosome complex subunit 2 OS=Danio rerio ... [more]
CSN2_DROME2.974e-6656.76COP9 signalosome complex subunit 2 OS=Drosophila m... [more]
CSN2_DICDI1.293e-6151.14COP9 signalosome complex subunit 2 OS=Dictyosteliu... [more]
CSN2_EMENI8.380e-6148.42COP9 signalosome complex subunit 2 OS=Emericella n... [more]
CSN2_CAEEL3.893e-5850.89COP9 signalosome complex subunit 2 OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionC02025B08SK IF1 Citrus clementina cDNA clone C02025B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290528 ID=CX290528; Name=CX290528; organism=Citrus clementina; type=EST; length=681bp
GGCCGAGGGTTTGAATCTCAGATGAGGAGCCTGAAGAGCAGGATGTCGAC
ATCGAGAATCAATATTACAACTCCAAAGGTTTGGTTGAAACGGATCCAGA
AGGGGCACTTGCTGGTTTTGCTGAAGTAGTTGCCATGGAACCTGAGAAGG
CTGAGTGGGGATTCAAAGCACTGAAGCAAACTGTAAAGCTCTATTATCGG
CTAGGGAAGTATAAAGAAATGATGGATGCTTATAGGGAGATGTTAACATA
TATCAAATCTGCAGTGACACGAAACTACAGTGAGAAGTGCATAAACAACA
TAATGGATTTTGTTTCTGGATCTGCAAGTCAGAATTTCAGTCTCCTGCGA
GAATTTTATCAGACCACTTTGAAGGCTCTTGAAGAGGCTAAGAATGAGAG
GCTTTGGTTCAAGACGAATCTTAAGCTTTGCAAAATCTGGTTCGATATGG
GTGAATATGGGCGAATGAGTAAGATTTTGAAGGAACTTCATAAATCTTGT
CAAAGAGAAGATGGGACAGATGATCAAAAGAAAGGAAGTCAACTTCTGGA
GGTCTATGCAATCGAGATTCAAATGTACACTGAAACCAAAAATAACAAGA
AGCTAAAGCAATTATACCAGAAAGCTCTTGCTATCAAGTCAGCCATACCA
CATCCAAGGATCATGGGAAATATTCGTGAAT
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