CX290530

Overview
NameCX290530
Unique NameCX290530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:492..1154. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 9.017e-113
Identity = 203/221 (91.86%), Postives = 217/221 (98.19%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGV 663
            +PEFAKKLASLADLYVNDAFG+AHRAHASTEGVAK+LKP+VAGFLMQKELDYLVGAV+NP+KPFAAIVGGSKVS+KIGVIESLLEKVD+LLLGGGMIFTFYKAQG++VGSSLVEEDKLDL TSLMEKAK+KGVSLLLPTDVVIADKFAADANSKVVPA+ IPDGWMGLD+GPDAIKSF  ALDTTKT+IWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGV
Sbjct:  131 EPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQKELDYLVGAVANPQKPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYAVGSSLVEEDKLDLATSLMEKAKAKGVSLLLPTDVVIADKFAADANSKVVPASEIPDGWMGLDIGPDAIKSFGSALDTTKTVIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGV 351          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 9.331e-110
Identity = 196/221 (88.69%), Postives = 215/221 (97.29%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGV 663
            +PEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYLVGAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSLVEEDKL+L TSL+EKAK+KGVSLLLP+DVVIADKFA DANSK+VPA+AIPDGWMGLD+GPD++K+F++ALDTTKT+IWNGPMGVFEFDKFA GTEAIAKKLA+LSGKGV
Sbjct:  205 EPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLEKAKAKGVSLLLPSDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNDALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGV 425          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 391.734 bits (1005), Expect = 1.760e-108
Identity = 196/220 (89.09%), Postives = 211/220 (95.91%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG 660
            DPEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYLVGAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSLVEEDKLDL TSL+ KAK KGVSLLLPTDVVIADKFAADA+SK+VPA+ IPDGWMGLD+GPD+IK+FSEALDTT+T+IWNGPMGVFEF+KFAAGTEAIAKKL E+S KG
Sbjct:  158 DPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGMSVGSSLVEEDKLDLATSLLAKAKEKGVSLLLPTDVVIADKFAADADSKIVPASGIPDGWMGLDIGPDSIKTFSEALDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLEEISKKG 377          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 3.002e-108
Identity = 194/221 (87.78%), Postives = 213/221 (96.38%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGV 663
            DPEFAKKLAS+ADLYVNDAFG+AHRAHASTEGV KFL+PSVAGFLMQKELDYLVGAV+NPKKPFAAIVGGSKVS+KIGVIESLL KVDIL+LGGGMIFTFYKAQG +VG SLVEEDKL+L TSL+E AKSKGV LLLPTDVV+ADKFAADA SK+VPATAIPDGWMGLDVGPD+IK+F+EALDTTKT+IWNGPMGVFEF+KFAAGT+AIAK+LAEL+GKGV
Sbjct:  131 DPEFAKKLASVADLYVNDAFGTAHRAHASTEGVTKFLRPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSSKIGVIESLLAKVDILILGGGMIFTFYKAQGLAVGKSLVEEDKLELATSLIETAKSKGVKLLLPTDVVVADKFAADAESKIVPATAIPDGWMGLDVGPDSIKTFAEALDTTKTVIWNGPMGVFEFEKFAAGTDAIAKQLAELTGKGV 351          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 4.792e-106
Identity = 191/221 (86.43%), Postives = 211/221 (95.48%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGV 663
            DPEFAKKLASLADL+VNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYL GAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSLVEEDKL+L TSL+ KAK+KGVSLLLP+DV+IADKFA DANS+ VPA+AIPDGWMGLD+GPD++K+F++ALDTT+TIIWNGPMGVFEFDKFA GTE+IAKKLAELS KGV
Sbjct:  202 DPEFAKKLASLADLFVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPSDVIIADKFAPDANSQTVPASAIPDGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLAELSKKGV 422          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 2.378e-105
Identity = 190/221 (85.97%), Postives = 209/221 (94.57%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGV 663
            +P+FAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+QKELDYLVGAVSNPK+PFAAIVGGSKVS+KIGVIESLLEK DILLLGGGMIFTFYKAQG SVGSSLVEEDKL+L T L+ KAK+KGVSLLLPTDVV+ADKFA DANSK+VPA+ I DGWMGLD+GPD+IK+F+EALDTT+T+IWNGPMGVFE +KFAAGTEAIA KLAELS KGV
Sbjct:  203 EPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNEALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELSEKGV 423          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 4.354e-91
Identity = 166/220 (75.45%), Postives = 188/220 (85.45%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG 660
            D +FAK+LA LAD+YVNDAFG+AHRAHASTEGV KFLKPSVAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E+L++K D +L+GGGMIFTFYKA+G +VG SLVEEDKL+L   L  KAK+KGV LLLPTDV++AD FA DANS+V   TAIPDGWMGLD+GPDAIK F  AL   KT+IWNGPMGVFEFDKFAAGT AIA  LAELSGKG
Sbjct:  131 DADFAKQLAGLADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLEALIDKCDKVLIGGGMIFTFYKARGLAVGKSLVEEDKLELAKELEAKAKAKGVELLLPTDVLLADNFAPDANSQVADVTAIPDGWMGLDIGPDAIKVFQAALADCKTVIWNGPMGVFEFDKFAAGTNAIATTLAELSGKG 350          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 9.701e-91
Identity = 162/219 (73.97%), Postives = 192/219 (87.67%), Query Frame = 1
Query:    4 PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG 660
            PEFA++LAS+ADLYVNDAFG+AHRAHASTEGV ++L+PSVAG+L++KEL YL  A+ NP++P AAIVGGSKVS+KIGVIE+LLEKVD LLLGGGMIFTFYKA+G +VG SLVEEDKL+L  +L  KAK +GV+LLLPTDVV+AD FAADAN++ V   +IPDGWMGLD+GPDA+K+F EAL   KT+IWNGPMGVFEFDKFA GTEAIA  LA L+GKG
Sbjct:  137 PEFAQELASVADLYVNDAFGTAHRAHASTEGVTRYLRPSVAGYLIEKELQYLQSAIENPQRPLAAIVGGSKVSSKIGVIETLLEKVDKLLLGGGMIFTFYKARGLNVGKSLVEEDKLELARTLEAKAKERGVALLLPTDVVVADAFAADANAQTVSVESIPDGWMGLDIGPDAVKTFQEALSDCKTVIWNGPMGVFEFDKFAVGTEAIAHSLAGLTGKG 355          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGK_SYNS9 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9902) GN=pgk PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.822e-90
Identity = 164/220 (74.55%), Postives = 187/220 (85.00%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG 660
            D  FA+KLA+LAD+YVNDAFG+AHRAHASTEGV KFLKPSVAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E+L++K D +L+GGGMIFTFYKA+G +VG SLVEEDKL+L   L  KAK+KGV LLLPTDVV+AD FA DANS++   TAIPDGWMGLD+GPDAIK F  AL   KT+IWNGPMGVFEFDKFAAGT AIA  LAE+ GKG
Sbjct:  131 DSGFAEKLAALADVYVNDAFGAAHRAHASTEGVTKFLKPSVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLEALIDKCDKVLIGGGMIFTFYKARGLAVGKSLVEEDKLELAKELEAKAKAKGVELLLPTDVVLADNFAPDANSQIADVTAIPDGWMGLDIGPDAIKVFQAALADCKTVIWNGPMGVFEFDKFAAGTNAIATTLAEIGGKG 350          
BLAST of CX290530 vs. ExPASy Swiss-Prot
Match: PGK_SYNPX (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH8102) GN=pgk PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.829e-89
Identity = 162/220 (73.64%), Postives = 187/220 (85.00%), Query Frame = 1
Query:    1 DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVSNPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGHSVGSSLVEEDKLDLGTSLMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKG 660
            D  FA+KLA LA++YVNDAFG+AHRAHASTEGV KFLKP+VAGFLM+KEL YL GAV  PK+P AAIVGGSKVS+KIGV+E+L++K D +L+GGGMIFTFYKA+G SVG SLVEEDKL+L   L  KAK+KGV LLLPTDVV+AD FA DANS+V   TAIPDGWMGLD+GPDA+K F +AL   +T+IWNGPMGVFEF+KFA GT AIA  LAELSGKG
Sbjct:  131 DAGFAEKLAGLAEVYVNDAFGAAHRAHASTEGVTKFLKPAVAGFLMEKELQYLQGAVDEPKRPLAAIVGGSKVSSKIGVLEALIDKCDKVLIGGGMIFTFYKARGLSVGKSLVEEDKLELAKELEAKAKAKGVELLLPTDVVLADNFAPDANSQVADVTAIPDGWMGLDIGPDAVKVFQDALGDCQTVIWNGPMGVFEFEKFATGTNAIATTLAELSGKG 350          
The following BLAST results are available for this feature:
BLAST of CX290530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKY_TOBAC9.017e-11391.86Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKH_TOBAC9.331e-11088.69Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_SPIOL1.760e-10889.09Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKY_WHEAT3.002e-10887.78Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_WHEAT4.792e-10686.43Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKH_ARATH2.378e-10585.97Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGK_SYNS34.354e-9175.45Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_CYAP49.701e-9173.97Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_SYNS92.822e-9074.55Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNPX1.829e-8973.64Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC02025B10SK IF1 Citrus clementina cDNA clone C02025B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290530 ID=CX290530; Name=CX290530; organism=Citrus clementina; type=EST; length=663bp
GACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAA
TGATGCATTCGGATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGG
CTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTTATGCAAAAGGAACTA
GATTATCTTGTTGGAGCTGTTTCAAATCCCAAGAAACCATTTGCTGCCAT
TGTTGGTGGTTCAAAGGTGTCAACTAAGATCGGTGTTATTGAATCACTTT
TGGAGAAGGTTGACATTCTATTGCTCGGTGGAGGAATGATCTTTACCTTT
TACAAGGCCCAAGGACACTCTGTTGGTTCATCCCTTGTTGAGGAAGACAA
GCTTGATCTCGGTACGTCACTTATGGAGAAGGCCAAATCTAAAGGGGTGT
CTCTTCTGCTCCCTACTGATGTTGTTATTGCTGACAAGTTTGCTGCTGAT
GCCAACAGCAAGGTGGTGCCAGCAACGGCAATTCCAGATGGTTGGATGGG
CTTGGATGTTGGACCTGATGCCATCAAGTCATTCAGTGAAGCTTTGGATA
CTACTAAAACCATCATCTGGAATGGACCTATGGGTGTGTTTGAATTTGAT
AAATTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCAG
CGGGAAGGGAGTG
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