CX290539

Overview
NameCX290539
Unique NameCX290539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX290539 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 51/204 (25.00%), Postives = 94/204 (46.08%), Query Frame = 2 
Query:   14 SGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP----VGTKVKCFADAGYFINAKDVSGASHIEQF-YAQVVATHGSAKH----LPASCTSRLSPG---LCFFPQYMARQITTPLFIINAAYDSWQ--IKNILAPGVADPHGTW 583
            +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG   +L+ D    L         +V+  AD+G+F++ K    +  I+    A   A     ++    +P  C  +   G    CFF   +   +  P+F++   +D  Q  + N+   G     G W
Sbjct:  166 TGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRRSDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQLTVDNVHLTGQPVQEGQW 368
The following BLAST results are available for this feature:
BLAST of CX290539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NOTUM_MOUSE2.343e-1125.00Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
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Properties
Property NameValue
Genbank descriptionC02025C09SK IF1 Citrus clementina cDNA clone C02025C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290539 ID=CX290539; Name=CX290539; organism=Citrus clementina; type=EST; length=725bp
GAGGGTTGCATTCTCTGGGATGCTGAGCAACAAGCAAAAATTTAACCCAG
ACTTCTACAATTGGAATAGAATCAAGGTTAGATACTGTGATGGGGCATCG
TTTACTGGAGATGTGGAGGCTGTCAATCCAGCAAATAACCTTCACTTCAG
AGGAGCAAGGGTTTTTCAAGCTGTCATGGAGGATCTAATGGCTAAAGGGA
TGAAAAATGCTCAAAATGCTGTTCTTTCTGGCTGCTCAGCTGGGGGATTG
ACTTCAATTTTGCATTGTGATAACTTCCGAGCTCTCTTCCCTGTGGGTAC
TAAAGTAAAATGCTTTGCAGATGCTGGTTATTTTATCAACGCGAAGGATG
TTTCTGGAGCAAGTCACATTGAGCAGTTTTATGCTCAAGTGGTCGCAACA
CATGGATCAGCTAAGCATTTGCCAGCATCCTGCACTTCAAGATTGAGCCC
AGGACTGTGTTTCTTCCCACAATACATGGCACGGCAAATAACAACACCGC
TATTTATCATAAATGCGGCCTATGATTCATGGCAGATAAAGAACATTTTG
GCACCAGGTGTTGCTGATCCACATGGAACTTGGCATAGCTGCAAGCTTGA
TATAAACAACTGCTCACCTACTCAGCTGCAAACAAATGCAAGTTTCAGGA
CACAATTCTTAAATGCATTGGCTGGACTGGGCATCTCTTCATCCAGAGGG
ATGTTTATAGACGCTTGTTATGCCC
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