CX290540

Overview
NameCX290540
Unique NameCX290540
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.627e-91
Identity = 167/191 (87.43%), Postives = 180/191 (94.24%), Query Frame = 1
Query:   76 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPK 648
            MA KKSV  LKEADLKGKRVFVRVDLNVPLD+N NITDD R+RAAVPTIKYLM HG+ VIL+SHLGRPKGVTPKYSLKPLVPRLSELLGVEVK+AND IG EVEK+VAEIPEGGVLLLENVRF+KEEEKN+PEFAKKLASLADLYVNDAFG+AHRAHASTEGVAK+LKP+VAGFLM KELDYLV AV+NP+
Sbjct:    1 MAVKKSVGSLKEADLKGKRVFVRVDLNVPLDENFNITDDTRIRAAVPTIKYLMQHGSHVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKIANDSIGPEVEKLVAEIPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQKELDYLVGAVANPQ 191          

HSP 2 Score: 25.0238 bits (53), Expect = 2.627e-91
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            Q+PFAAIVGGS+
Sbjct:  191 QKPFAAIVGGSK 202          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 1.552e-85
Identity = 158/189 (83.60%), Postives = 171/189 (90.48%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPK 648
            AKKSV  L  A+LKGK+VFVR DLNVPLDDN NITDD R+RAAVPTIK+LM +GAKVILSSHLGRPKGVTPKYSL PLVPRLSELLG++V    DCIG EVEK+VA +PEGGVLLLENVRF+KEEEKN+PEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+ KELDYLV AVSNPK
Sbjct:   77 AKKSVGDLTAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLMANGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLGIQVVKVEDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPK 265          

HSP 2 Score: 23.0978 bits (48), Expect = 1.552e-85
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            + PFAAIVGGS+
Sbjct:  265 KRPFAAIVGGSK 276          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 1.553e-85
Identity = 157/189 (83.07%), Postives = 174/189 (92.06%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPK 648
            AKKSV  L  ADLKGK+VFVR DLNVPLDD+ NITDD R+RAA+PTIK+L+ +GAKVILSSHLGRPKGVTPK+SL PLVPRLSELLG++V  A+DCIG +VEK+VAE+PEGGVLLLENVRF+KEEEKNDPEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+ KELDYLV AVSNPK
Sbjct:   30 AKKSVGDLTSADLKGKKVFVRADLNVPLDDSQNITDDTRIRAAIPTIKHLINNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGLQVVKADDCIGPDVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPK 218          

HSP 2 Score: 23.0978 bits (48), Expect = 1.553e-85
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            + PFAAIVGGS+
Sbjct:  218 KRPFAAIVGGSK 229          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 1.699e-84
Identity = 155/191 (81.15%), Postives = 172/191 (90.05%), Query Frame = 1
Query:   76 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPK 648
            MA K+SV  L EADLKGK+VFVR DLNVPLDD   ITDD R+RA++PTIKYL+  GAKVIL+SHLGRPKGVTPK+SLKPLV RLSELLG+EV MA DCIGEEVEK+ A +P+GGVLLLENVRF+KEEEKNDPEFAKKLAS+ADLYVNDAFG+AHRAHASTEGV KFL+PSVAGFLM KELDYLV AV+NPK
Sbjct:    1 MATKRSVGTLGEADLKGKKVFVRADLNVPLDDAQKITDDTRIRASIPTIKYLLEKGAKVILASHLGRPKGVTPKFSLKPLVARLSELLGLEVVMAPDCIGEEVEKLAAALPDGGVLLLENVRFYKEEEKNDPEFAKKLASVADLYVNDAFGTAHRAHASTEGVTKFLRPSVAGFLMQKELDYLVGAVANPK 191          

HSP 2 Score: 23.483 bits (49), Expect = 1.699e-84
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            ++PFAAIVGGS+
Sbjct:  191 KKPFAAIVGGSK 202          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 3.766e-84
Identity = 154/189 (81.48%), Postives = 171/189 (90.48%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPK 648
            AKKSV  L   DLKGK+VFVR DLNVPLDDN NITDD R+RAA+PTIK+L+ +GAKVILS+HLGRPKGVTPK+SL PLVPRLSELLG+EV  A+DCIG EVE +VA +PEGGVLLLENVRF+KEEEKN+P+FAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+ KELDYLV AVSNPK
Sbjct:   75 AKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVETLVASLPEGGVLLLENVRFYKEEEKNEPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPK 263          

HSP 2 Score: 23.0978 bits (48), Expect = 3.766e-84
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            + PFAAIVGGS+
Sbjct:  263 KRPFAAIVGGSK 274          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 3.450e-82
Identity = 153/189 (80.95%), Postives = 168/189 (88.89%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPK 648
            AKKSV  L  ADL+GKRV VR DLNVPLDDN NITDD R+RAA+PTIKYL+ +GAKVIL+SHLGRPKGVTPK+SL PLVPRLSELLG+EVK A D IG EVEK+VA++  G VLLLENVRF+KEEEKNDPEFAKKLASLADL+VNDAFG+AHRAHASTEGV KFLKPSVAGFL+ KELDYL  AVSNPK
Sbjct:   74 AKKSVGDLTAADLEGKRVLVRADLNVPLDDNQNITDDTRIRAAIPTIKYLLSNGAKVILTSHLGRPKGVTPKFSLAPLVPRLSELLGIEVKKAEDVIGPEVEKLVADLANGAVLLLENVRFYKEEEKNDPEFAKKLASLADLFVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVSNPK 262          

HSP 2 Score: 23.0978 bits (48), Expect = 3.450e-82
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            + PFAAIVGGS+
Sbjct:  262 KRPFAAIVGGSK 273          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.093e-71
Identity = 142/199 (71.36%), Postives = 161/199 (80.90%), Query Frame = 1
Query:   79 AAKKSVSVLKEADLKGKRVFVRVDLNVPLDDN-LNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            A KKSV  L +ADL+GKRVFVR DLNVPLD   L ITDD R+RAAVPT+KYL+ +GAKV+L+SHLGRPKG    KY L P+V RLSELLG EVK  +DCIG  VE+ VA +  G +LLLENVRF+KEEEKNDPEFAKKLAS ADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+ KELDYL  AVS PK   + ++
Sbjct:   61 AVKKSVGDLGKADLEGKRVFVRADLNVPLDKKTLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKEVKKVDDCIGPSVEQAVASLKSGELLLLENVRFYKEEEKNDPEFAKKLASNADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVSAPKRPFVAIV 259          

HSP 2 Score: 21.557 bits (44), Expect = 9.093e-71
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            + PF AIVGGS+
Sbjct:  252 KRPFVAIVGGSK 263          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.200e-69
Identity = 139/199 (69.85%), Postives = 159/199 (79.90%), Query Frame = 1
Query:   79 AAKKSVSVLKEADLKGKRVFVRVDLNVPLDD-NLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            A KKSV  L +ADL+GKRVFVR DLNVPLD   L ITDD R+RAAVPT+KYL+ +GAKV+L+SHLGRPKG    KY L P+V RLSELLG  V   +DCIG EVEK V  +  G +LLLEN RF+KEEEKN+PEFAKKLA+ ADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+ KELDYL  AVSNPK   + ++
Sbjct:   60 AVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVTKVDDCIGPEVEKAVGAMKNGELLLLENCRFYKEEEKNEPEFAKKLAANADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLDGAVSNPKRPFVAIV 258          

HSP 2 Score: 21.557 bits (44), Expect = 2.200e-69
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            + PF AIVGGS+
Sbjct:  251 KRPFVAIVGGSK 262          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_ANAVT (Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.389e-65
Identity = 128/196 (65.31%), Postives = 149/196 (76.02%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +KK+V+ L  AD+ GKR  VRVD NVPLDD  NITDD R+RAA+PTI+ L   GAKVIL+SH GRPKGV  K  L P+  RLSELLG EV   +D IG+EV   VA +  G VLLLENVRF+KEEEKNDPEFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L+ KEL YL  A+ NP+  L  ++
Sbjct:    2 SKKTVASLSAADISGKRALVRVDFNVPLDDQGNITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDEKLRLTPVAKRLSELLGQEVVKTDDSIGDEVAAKVAALQNGQVLLLENVRFYKEEEKNDPEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQSAIENPQRPLAAII 197          

HSP 2 Score: 21.9422 bits (45), Expect = 2.389e-65
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            Q P AAI+GGS+
Sbjct:  190 QRPLAAIIGGSK 201          
BLAST of CX290540 vs. ExPASy Swiss-Prot
Match: PGK_ANASP (Phosphoglycerate kinase OS=Anabaena sp. (strain PCC 7120) GN=pgk PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.115e-65
Identity = 128/196 (65.31%), Postives = 149/196 (76.02%), Query Frame = 1
Query:   82 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVVAVSNPKNHLLPLL 669
            +KK+V+ L  AD+ GKR  VRVD NVPLDD  NITDD R+RAA+PTI+ L   GAKVIL+SH GRPKGV  K  L P+  RLSELLG EV   +D IG+EV   VA +  G VLLLENVRF+KEEEKNDPEFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L+ KEL YL  A+ NP+  L  ++
Sbjct:    2 SKKTVASLSAADISGKRALVRVDFNVPLDDQGNITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDEKLRLTPVAKRLSELLGQEVIKTDDSIGDEVAAKVATLQNGQVLLLENVRFYKEEEKNDPEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEKELQYLQSAIENPQRPLAAII 197          

HSP 2 Score: 21.9422 bits (45), Expect = 3.115e-65
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  645 QEPFAAIVGGSR 680
            Q P AAI+GGS+
Sbjct:  190 QRPLAAIIGGSK 201          
The following BLAST results are available for this feature:
BLAST of CX290540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKY_TOBAC2.627e-9187.43Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKH_TOBAC1.552e-8583.60Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_SPIOL1.553e-8583.07Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKY_WHEAT1.699e-8481.15Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_ARATH3.766e-8481.48Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGKH_WHEAT3.450e-8280.95Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKH_VOLCA9.093e-7171.36Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGKH_CHLRE2.200e-6969.85Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_ANAVT2.389e-6565.31Phosphoglycerate kinase OS=Anabaena variabilis (st... [more]
PGK_ANASP3.115e-6565.31Phosphoglycerate kinase OS=Anabaena sp. (strain PC... [more]

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Properties
Property NameValue
Genbank descriptionC02025C10SK IF1 Citrus clementina cDNA clone C02025C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290540 ID=CX290540; Name=CX290540; organism=Citrus clementina; type=EST; length=733bp
TTCGGCCGAGGTCTCATTCCAAATCTACCAAAACCCTTTCTCGATTTCTC
TGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAAGCG
TTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTGGAT
CTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAGAGT
CCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCAAAG
TCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAGTAC
AGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGAGGT
TAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGGCTG
AAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCATAAG
GAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCTTGC
AGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATGCTT
CCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTCCTT
ATGNCAAAGGAACTAGATTATCTTGTTGTAGCTGTTTCAAATCCCAAGAA
CCATTTGCTGCCATTGTTGGTGGTTCAAGGTGTCAACTAAGATCGGTGTT
ATTGATCACTTTTGGAGAAAGTGACATTCTATT
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