CX290541

Overview
NameCX290541
Unique NameCX290541
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:24..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.210e-85
Identity = 157/178 (88.20%), Postives = 169/178 (94.94%), Query Frame = 1
Query:   79 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            MA KKSV  LKEADLKGKRVFVRVDLNVPLD+N NITDD R+RAAVPTIKYLM HG+ VIL+SHLGRPKGVTPKYSLKPLVPRLSELLGVEVK+AND IG EVEK+VAEIPEGGVLLLENVRF+KEEEKN+PEFAKKLASLADLYVNDAFG+AHRAHASTEGVAK+LKP+VAGFLMQ+
Sbjct:    1 MAVKKSVGSLKEADLKGKRVFVRVDLNVPLDENFNITDDTRIRAAVPTIKYLMQHGSHVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKIANDSIGPEVEKLVAEIPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQK 178          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 5.579e-79
Identity = 146/176 (82.95%), Postives = 160/176 (90.91%), Query Frame = 1
Query:   85 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            AKKSV  L  A+LKGK+VFVR DLNVPLDDN NITDD R+RAAVPTIK+LM +GAKVILSSHLGRPKGVTPKYSL PLVPRLSELLG++V    DCIG EVEK+VA +PEGGVLLLENVRF+KEEEKN+PEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+Q+
Sbjct:   77 AKKSVGDLTAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLMANGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLGIQVVKVEDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQK 252          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 5.579e-79
Identity = 145/176 (82.39%), Postives = 163/176 (92.61%), Query Frame = 1
Query:   85 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            AKKSV  L  ADLKGK+VFVR DLNVPLDD+ NITDD R+RAA+PTIK+L+ +GAKVILSSHLGRPKGVTPK+SL PLVPRLSELLG++V  A+DCIG +VEK+VAE+PEGGVLLLENVRF+KEEEKNDPEFAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+Q+
Sbjct:   30 AKKSVGDLTSADLKGKKVFVRADLNVPLDDSQNITDDTRIRAAIPTIKHLINNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGLQVVKADDCIGPDVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQK 205          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 3.616e-78
Identity = 144/178 (80.90%), Postives = 161/178 (90.45%), Query Frame = 1
Query:   79 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            MA K+SV  L EADLKGK+VFVR DLNVPLDD   ITDD R+RA++PTIKYL+  GAKVIL+SHLGRPKGVTPK+SLKPLV RLSELLG+EV MA DCIGEEVEK+ A +P+GGVLLLENVRF+KEEEKNDPEFAKKLAS+ADLYVNDAFG+AHRAHASTEGV KFL+PSVAGFLMQ+
Sbjct:    1 MATKRSVGTLGEADLKGKKVFVRADLNVPLDDAQKITDDTRIRASIPTIKYLLEKGAKVILASHLGRPKGVTPKFSLKPLVARLSELLGLEVVMAPDCIGEEVEKLAAALPDGGVLLLENVRFYKEEEKNDPEFAKKLASVADLYVNDAFGTAHRAHASTEGVTKFLRPSVAGFLMQK 178          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.374e-77
Identity = 142/176 (80.68%), Postives = 160/176 (90.91%), Query Frame = 1
Query:   85 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            AKKSV  L   DLKGK+VFVR DLNVPLDDN NITDD R+RAA+PTIK+L+ +GAKVILS+HLGRPKGVTPK+SL PLVPRLSELLG+EV  A+DCIG EVE +VA +PEGGVLLLENVRF+KEEEKN+P+FAKKLASLADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+Q+
Sbjct:   75 AKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVETLVASLPEGGVLLLENVRFYKEEEKNEPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQK 250          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 1.984e-76
Identity = 142/176 (80.68%), Postives = 158/176 (89.77%), Query Frame = 1
Query:   85 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            AKKSV  L  ADL+GKRV VR DLNVPLDDN NITDD R+RAA+PTIKYL+ +GAKVIL+SHLGRPKGVTPK+SL PLVPRLSELLG+EVK A D IG EVEK+VA++  G VLLLENVRF+KEEEKNDPEFAKKLASLADL+VNDAFG+AHRAHASTEGV KFLKPSVAGFL+Q+
Sbjct:   74 AKKSVGDLTAADLEGKRVLVRADLNVPLDDNQNITDDTRIRAAIPTIKYLLSNGAKVILTSHLGRPKGVTPKFSLAPLVPRLSELLGIEVKKAEDVIGPEVEKLVADLANGAVLLLENVRFYKEEEKNDPEFAKKLASLADLFVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQK 249          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.175e-66
Identity = 132/179 (73.74%), Postives = 149/179 (83.24%), Query Frame = 1
Query:   82 AAKKSVSVLKEADLKGKRVFVRVDLNVPLDDN-LNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            A KKSV  L +ADL+GKRVFVR DLNVPLD   L ITDD R+RAAVPT+KYL+ +GAKV+L+SHLGRPKG    KY L P+V RLSELLG EVK  +DCIG  VE+ VA +  G +LLLENVRF+KEEEKNDPEFAKKLAS ADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+Q+
Sbjct:   61 AVKKSVGDLGKADLEGKRVFVRADLNVPLDKKTLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKEVKKVDDCIGPSVEQAVASLKSGELLLLENVRFYKEEEKNDPEFAKKLASNADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQK 239          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 6.621e-64
Identity = 128/179 (71.51%), Postives = 146/179 (81.56%), Query Frame = 1
Query:   82 AAKKSVSVLKEADLKGKRVFVRVDLNVPLDD-NLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            A KKSV  L +ADL+GKRVFVR DLNVPLD   L ITDD R+RAAVPT+KYL+ +GAKV+L+SHLGRPKG    KY L P+V RLSELLG  V   +DCIG EVEK V  +  G +LLLEN RF+KEEEKN+PEFAKKLA+ ADLYVNDAFG+AHRAHASTEGV KFLKPSVAGFL+Q+
Sbjct:   60 AVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVTKVDDCIGPEVEKAVGAMKNGELLLLENCRFYKEEEKNEPEFAKKLAANADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQK 238          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_ANAVT (Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.526e-60
Identity = 119/176 (67.61%), Postives = 138/176 (78.41%), Query Frame = 1
Query:   85 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            +KK+V+ L  AD+ GKR  VRVD NVPLDD  NITDD R+RAA+PTI+ L   GAKVIL+SH GRPKGV  K  L P+  RLSELLG EV   +D IG+EV   VA +  G VLLLENVRF+KEEEKNDPEFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L+++
Sbjct:    2 SKKTVASLSAADISGKRALVRVDFNVPLDDQGNITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDEKLRLTPVAKRLSELLGQEVVKTDDSIGDEVAAKVAALQNGQVLLLENVRFYKEEEKNDPEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEK 177          
BLAST of CX290541 vs. ExPASy Swiss-Prot
Match: PGK_ANASP (Phosphoglycerate kinase OS=Anabaena sp. (strain PCC 7120) GN=pgk PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.993e-60
Identity = 119/176 (67.61%), Postives = 138/176 (78.41%), Query Frame = 1
Query:   85 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMQR 612
            +KK+V+ L  AD+ GKR  VRVD NVPLDD  NITDD R+RAA+PTI+ L   GAKVIL+SH GRPKGV  K  L P+  RLSELLG EV   +D IG+EV   VA +  G VLLLENVRF+KEEEKNDPEFAKKLA+ AD YVNDAFG+AHRAHASTEGV KFL PSVAG+L+++
Sbjct:    2 SKKTVASLSAADISGKRALVRVDFNVPLDDQGNITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDEKLRLTPVAKRLSELLGQEVIKTDDSIGDEVAAKVATLQNGQVLLLENVRFYKEEEKNDPEFAKKLAANADFYVNDAFGTAHRAHASTEGVTKFLSPSVAGYLVEK 177          
The following BLAST results are available for this feature:
BLAST of CX290541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKY_TOBAC5.210e-8588.20Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKH_TOBAC5.579e-7982.95Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_SPIOL5.579e-7982.39Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKY_WHEAT3.616e-7880.90Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_ARATH1.374e-7780.68Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGKH_WHEAT1.984e-7680.68Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKH_VOLCA3.175e-6673.74Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGKH_CHLRE6.621e-6471.51Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_ANAVT1.526e-6067.61Phosphoglycerate kinase OS=Anabaena variabilis (st... [more]
PGK_ANASP1.993e-6067.61Phosphoglycerate kinase OS=Anabaena sp. (strain PC... [more]

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Properties
Property NameValue
Genbank descriptionC02025C11SK IF1 Citrus clementina cDNA clone C02025C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290541 ID=CX290541; Name=CX290541; organism=Citrus clementina; type=EST; length=614bp
GATTCGGCCGAGGTCTCATTCCAAAATCTACCAAAACCCTTTCTCGATTT
CTCTGATCTCGTGTTTGATCGAATCAAAATGGCCGCCAAGAAGAGTGTAA
GCGTTCTAAAAGAAGCTGATTTGAAGGGAAAGAGAGTGTTCGTACGAGTG
GATCTGAACGTGCCGTTGGATGACAACTTGAATATCACCGATGACAACAG
AGTCCGTGCTGCTGTTCCCACTATCAAATACCTGATGGGTCATGGCGCCA
AAGTCATTCTCTCCAGTCACTTGGGGCGTCCAAAGGGTGTTACACCCAAG
TACAGCTTGAAACCTCTTGTGCCAAGGCTTTCTGAACTTCTTGGAGTTGA
GGTTAAAATGGCAAACGACTGCATTGGTGAAGAAGTTGAAAAAATGGTGG
CTGAAATTCCCGAAGGGGGCGTCTTGCTCCTCGAAAATGTGAGGTTCCAT
AAGGAGGAAGAGAAGAATGACCCAGAGTTTGCTAAGAAGCTAGCTTCTCT
TGCAGATCTCTATGTTAATGATGCATTCGGATCTGCCCATAGAGCCCATG
CTTCCACTGAGGGTGTGGCTAAGTTCTTGAAGCCTTCTGTGGCTGGTTTC
CTTATGCAAAGGAA
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