CX290545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: DHR12_BOVIN (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.331e-38 Identity = 84/196 (42.86%), Postives = 124/196 (63.27%), Query Frame = 1 Query: 52 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL-TDDLEFNSGSFDG 636 +R AA+ G +TK+G++ SK+F P+D++ ++ G+ +VTG N+GIG ATA +A RG TV++VCR + E A + I ++GN+N+ L + DLS + F F ++ ++VL+NNAG + N R +T +G E NFA N LG Y +T ++P+LEK D RVITVSSGGM L TDD + +FDG Sbjct: 4 YRSAAWFAKGLREYTKSGYESASKDFVPDDLEVQVPGRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENFK-QEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIPVLEK-EHDPRVITVSSGGMLVQKLNTDDPQSERTAFDG 197
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: DHR12_HUMAN (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 1.973e-37 Identity = 85/196 (43.37%), Postives = 120/196 (61.22%), Query Frame = 1 Query: 52 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL-TDDLEFNSGSFDG 636 +R + G +TK+G++ K+F P D++ +I G+ +VTG N+GIG ATA +A RG TV++VCR + E A I ++GN+N+ L + DLS +I F F + K +HVL+NNAG + N R +T +G E NFA N LG Y +T ++P+LEK D RVITVSSGGM L T+DL+ FDG Sbjct: 4 YRSVVWFAKGLREYTKSGYESACKDFVPHDLEVQIPGRVFLVTGGNSGIGKATALEIAKRGGTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDGLEKNFAANTLGVYILTTGLIPVLEK-EHDPRVITVSSGGMLVQKLNTNDLQSERTPFDG 197
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.731e-28 Identity = 71/156 (45.51%), Postives = 99/156 (63.46%), Query Frame = 1 Query: 151 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLTDDLEFN 618 +I GK V+TGAN GIG TA LA RGA VY+ CR KGE+A S IR+ T N V + DLS I++FA RF ++K +H+L+NNAGV+ T++GFE +F VN LG + +T L++ L+++AP ARV+ +SS AHL + F+ Sbjct: 36 QIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESAP-ARVVNLSS----IAHLIGKIRFH 186
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.851e-27 Identity = 68/163 (41.72%), Postives = 103/163 (63.19%), Query Frame = 1 Query: 151 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS-----GGMYTAHLTDDLEFNSG 624 ++ GK VVTGAN GIG TA+ LA RGA VY+ CR EKGE I++ TGN+ V + DLS I++FA F ++K +HVL+NNAGV+ T++GFE++ VN LG + +T L++ L+++AP +R++ VSS G ++ +L + +N+G Sbjct: 38 QLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNVSSLAHHLGRIHFHNLQGEKFYNAG 199
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.047e-26 Identity = 61/149 (40.94%), Postives = 96/149 (64.43%), Query Frame = 1 Query: 151 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 597 ++ GK +VTGAN GIG TA+ LA RGA VY+ CR +KGE A I++ TGN V + DL+ I++FA F ++K +H+L+NNAGV+ T++GFE++ VN LG + +T L++ L+++AP +R++ +SS G + + Sbjct: 35 QLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNLSSLGHHLGRI 182
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3) HSP 1 Score: 117.472 bits (293), Expect = 5.956e-26 Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1 Query: 151 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 573 ++ GK V+TGAN GIG TA LASRGA VY+ CR KGE+A S IR T N V + DLS I++FA F ++K +H+L+NNAGV+ T++GFE + VN LG + +T L++ L+ +AP ARV+ VSS Sbjct: 36 QLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSAP-ARVVNVSS 175
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.733e-25 Identity = 66/164 (40.24%), Postives = 94/164 (57.32%), Query Frame = 1 Query: 145 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLT-DDLEFNSGSFD 633 +A I GK +VTGAN GIG TA LA RG V + CR EK E A IR +T N V E DL+S+ I+ FA + +++ V +LVNNA V+ T +GFE+ F VN LG + +T L++ L+ +AP +R+I +SS H+ +DL + +D Sbjct: 33 KATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFEDLNWQMKKYD 195
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.733e-25 Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 1 Query: 160 GKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 573 GK V+TGAN GIG TA LA RGA VY+ CR KGE+A S I++ T N V + DLS I++FA F ++K +H+L+NNAGV+ T++GFE + AVN LG + +T L++ L+++AP ARV+ +SS Sbjct: 39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESAP-ARVVNLSS 175
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25 Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1 Query: 145 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLT-DDLEFNSGSFD 633 +A I GK +VTGAN GIG TA LA RG + + CR EK E A IR +T N +V+ DL+S+ I+ FA + +++ V +L+NNAGV+ T +GFE+ F VN LG + +T L++ L+ +AP +R+I +SS H+ DDL + + ++ Sbjct: 33 KATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFDDLNWQTRKYN 195
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 5.574e-24 Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 1 Query: 172 VVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAP---DARVITVSSGGMYTAHLT-DDLE 612 +VTG GIGY+TA+ LA G V + + K + +S I+ +T N+ V CDL+S+T I+ F +F +K P+HVL+NNAGV+ + T +GFE +F +N LG + +T L++ L+++ ARV+TVSS Y A L DDL+ Sbjct: 47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATHYVAELNMDDLQ 197 The following BLAST results are available for this feature:
BLAST of CX290545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290545 ID=CX290545; Name=CX290545; organism=Citrus clementina; type=EST; length=637bpback to top |