CX290545

Overview
NameCX290545
Unique NameCX290545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9458 contig Ccv1_Contig9458:91..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: DHR12_BOVIN (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.331e-38
Identity = 84/196 (42.86%), Postives = 124/196 (63.27%), Query Frame = 1
Query:   52 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL-TDDLEFNSGSFDG 636
            +R AA+   G   +TK+G++  SK+F P+D++ ++ G+  +VTG N+GIG ATA  +A RG TV++VCR   + E A + I  ++GN+N+ L + DLS    +  F   F  ++  ++VL+NNAG + N R +T +G E NFA N LG Y +T  ++P+LEK   D RVITVSSGGM    L TDD +    +FDG
Sbjct:    4 YRSAAWFAKGLREYTKSGYESASKDFVPDDLEVQVPGRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENFK-QEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIPVLEK-EHDPRVITVSSGGMLVQKLNTDDPQSERTAFDG 197          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: DHR12_HUMAN (Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.973e-37
Identity = 85/196 (43.37%), Postives = 120/196 (61.22%), Query Frame = 1
Query:   52 WRVAAFGVYGYMNFTKNGFKEHSKNFKPEDMQARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL-TDDLEFNSGSFDG 636
            +R   +   G   +TK+G++   K+F P D++ +I G+  +VTG N+GIG ATA  +A RG TV++VCR +   E A   I  ++GN+N+ L + DLS   +I  F   F  + K +HVL+NNAG + N R +T +G E NFA N LG Y +T  ++P+LEK   D RVITVSSGGM    L T+DL+     FDG
Sbjct:    4 YRSVVWFAKGLREYTKSGYESACKDFVPHDLEVQIPGRVFLVTGGNSGIGKATALEIAKRGGTVHLVCRDQAPAEDARGEIIRESGNQNIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDGLEKNFAANTLGVYILTTGLIPVLEK-EHDPRVITVSSGGMLVQKLNTNDLQSERTPFDG 197          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.731e-28
Identity = 71/156 (45.51%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  151 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLTDDLEFN 618
            +I GK  V+TGAN GIG  TA  LA RGA VY+ CR   KGE+A S IR+ T N  V +   DLS    I++FA RF  ++K +H+L+NNAGV+      T++GFE +F VN LG + +T L++  L+++AP ARV+ +SS     AHL   + F+
Sbjct:   36 QIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESAP-ARVVNLSS----IAHLIGKIRFH 186          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.851e-27
Identity = 68/163 (41.72%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  151 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS-----GGMYTAHLTDDLEFNSG 624
            ++ GK  VVTGAN GIG  TA+ LA RGA VY+ CR  EKGE     I++ TGN+ V +   DLS    I++FA  F  ++K +HVL+NNAGV+      T++GFE++  VN LG + +T L++  L+++AP +R++ VSS     G ++  +L  +  +N+G
Sbjct:   38 QLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNVSSLAHHLGRIHFHNLQGEKFYNAG 199          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH11_MOUSE (Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.047e-26
Identity = 61/149 (40.94%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  151 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHL 597
            ++ GK  +VTGAN GIG  TA+ LA RGA VY+ CR  +KGE A   I++ TGN  V +   DL+    I++FA  F  ++K +H+L+NNAGV+      T++GFE++  VN LG + +T L++  L+++AP +R++ +SS G +   +
Sbjct:   35 QLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAP-SRIVNLSSLGHHLGRI 182          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 5.956e-26
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1
Query:  151 RIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 573
            ++ GK  V+TGAN GIG  TA  LASRGA VY+ CR   KGE+A S IR  T N  V +   DLS    I++FA  F  ++K +H+L+NNAGV+      T++GFE +  VN LG + +T L++  L+ +AP ARV+ VSS
Sbjct:   36 QLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVSAP-ARVVNVSS 175          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.733e-25
Identity = 66/164 (40.24%), Postives = 94/164 (57.32%), Query Frame = 1
Query:  145 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLT-DDLEFNSGSFD 633
            +A I GK  +VTGAN GIG  TA  LA RG  V + CR  EK E A   IR +T N  V  E  DL+S+  I+ FA +   +++ V +LVNNA V+      T +GFE+ F VN LG + +T L++  L+ +AP +R+I +SS      H+  +DL +    +D
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFEDLNWQMKKYD 195          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.733e-25
Identity = 64/138 (46.38%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  160 GKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSS 573
            GK  V+TGAN GIG  TA  LA RGA VY+ CR   KGE+A S I++ T N  V +   DLS    I++FA  F  ++K +H+L+NNAGV+      T++GFE + AVN LG + +T L++  L+++AP ARV+ +SS
Sbjct:   39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESAP-ARVVNLSS 175          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  145 QARIEGKNCVVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAPDARVITVSSGGMYTAHLT-DDLEFNSGSFD 633
            +A I GK  +VTGAN GIG  TA  LA RG  + + CR  EK E A   IR +T N +V+    DL+S+  I+ FA +   +++ V +L+NNAGV+      T +GFE+ F VN LG + +T L++  L+ +AP +R+I +SS      H+  DDL + +  ++
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAP-SRIINLSSLAHVAGHIDFDDLNWQTRKYN 195          
BLAST of CX290545 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.574e-24
Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 1
Query:  172 VVTGANAGIGYATAEGLASRGATVYMVCRSKEKGETALSAIRSKTGNENVHLELCDLSSITEIKSFANRFSLKDKPVHVLVNNAGVLENNRLITSEGFELNFAVNVLGTYTITELMVPLLEKAAP---DARVITVSSGGMYTAHLT-DDLE 612
            +VTG   GIGY+TA+ LA  G  V +   +  K +  +S I+ +T N+ V    CDL+S+T I+ F  +F +K  P+HVL+NNAGV+   +  T +GFE +F +N LG + +T L++  L+++      ARV+TVSS   Y A L  DDL+
Sbjct:   47 IVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATHYVAELNMDDLQ 197          
The following BLAST results are available for this feature:
BLAST of CX290545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
DHR12_BOVIN2.331e-3842.86Dehydrogenase/reductase SDR family member 12 OS=Bo... [more]
DHR12_HUMAN1.973e-3743.37Dehydrogenase/reductase SDR family member 12 OS=Ho... [more]
RDH12_MOUSE3.731e-2845.51Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
RDH11_HUMAN1.851e-2741.72Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]
RDH11_MOUSE2.047e-2640.94Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 ... [more]
RDH12_HUMAN5.956e-2646.81Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 ... [more]
RDH13_MOUSE1.733e-2540.24Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ... [more]
RDH12_BOVIN1.733e-2546.38Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]
RDH13_HUMAN3.860e-2539.02Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
DHRSX_HUMAN5.574e-2440.40Dehydrogenase/reductase SDR family member on chrom... [more]

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Properties
Property NameValue
Genbank descriptionC02025D03SK IF1 Citrus clementina cDNA clone C02025D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290545 ID=CX290545; Name=CX290545; organism=Citrus clementina; type=EST; length=637bp
CTTTCGAGTCAGATTTCACCCACACAACTCTCAATGTTCCTCCTCCAAAA
ATGGAGAGTTGCAGCTTTTGGTGTGTATGGCTACATGAATTTCACAAAAA
ACGGCTTCAAAGAACACTCCAAAAATTTCAAACCGGAAGATATGCAAGCT
CGCATAGAAGGGAAAAATTGCGTAGTTACAGGAGCAAATGCTGGCATTGG
TTATGCTACCGCTGAGGGTCTTGCTTCACGTGGGGCCACTGTCTATATGG
TTTGTCGCAGTAAAGAGAAAGGAGAAACTGCTCTTTCTGCAATTCGATCT
AAGACAGGCAATGAAAATGTTCATCTGGAGCTGTGCGATCTTTCATCTAT
CACCGAGATCAAGTCTTTTGCGAACAGGTTTTCATTAAAGGATAAGCCAG
TTCATGTTTTGGTTAACAATGCTGGCGTGCTTGAAAATAACCGATTAATC
ACATCTGAAGGATTTGAGTTAAACTTTGCTGTAAATGTATTGGGCACATA
CACCATAACAGAATTAATGGTTCCTTTGCTGGAGAAAGCTGCACCTGATG
CTCGAGTGATCACAGTTTCCTCTGGAGGAATGTATACAGCTCACTTAACT
GATGATCTAGAGTTTAACAGTGGAAGCTTTGATGGGA
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