CX290573

Overview
NameCX290573
Unique NameCX290573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:   72 KIKVVLTS-PIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 485
            K+K +++  PI++ P++   F L  DASD A+GAVL Q    + Y+   S TLN+ ++NY T EKE+LA+V+A + FR YL+G    + +DH  L +L   KD   +L RW + L  FD + K  KG EN VAD +SR+
Sbjct:  489 KLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYI---SRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRI 624          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21
Identity = 54/135 (40.00%), Postives = 83/135 (61.48%), Query Frame = -3
Query:   72 VVLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 476
            +++  PI+Q P++   F L  DAS+ A+GAVL Q    I ++   S TLND +LNY   EKE+LA+V+A + FR YL+G + ++ +DH  L++L   K+   +L RW + L  +  +    KG EN VAD +SR+
Sbjct:  492 LIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFI---SRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRI 623          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20
Identity = 55/137 (40.15%), Postives = 83/137 (60.58%), Query Frame = -3
Query:   72 VVLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVD-RIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKII-VFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 476
            ++ +S I+  P +  PF L  DAS++A+GAVL Q    R   + Y S +LN  + NY T EKEMLA++++L+N R+YL G   I V+TDH  L + L  ++   +L RW   ++ ++ E   K G  NVVAD +SR+
Sbjct:  419 ILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRI 555          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.593e-15
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = -3
Query:   75 IIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKII-VFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSR 458
            I++ P+++ PF+L  DAS   +GAVL Q    I  +   S TL   + NY T E+E+LA+V+AL   +++L G + I +FTDH  L + +  ++   ++ RW   + + + +   K G EN VAD +SR
Sbjct:  485 ILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMI---SRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSR 610          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = -3
Query:   72 VLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPY--VYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGC--KIIVFTDHATLKYLLTKKD--AKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 473
            +++ P+++  ++     L  DASD AVGAVL Q+ D   Y  V Y S  ++ AQLNY  ++KEMLA++ +L+++R YL        + TDH  L   +T +      RL RW L LQ F+ E   + G+ N +AD +SR+
Sbjct:  693 LVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRI 832          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = -3
Query:   72 VLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPY--VYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGC--KIIVFTDHATLKYLLTKKD--AKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 473
            +++ P+++  ++     L  DASD AVGAVL Q+ D   Y  V Y S  ++ AQLNY  ++KEMLA++ +L+++R YL        + TDH  L   +T +      RL RW L LQ F+ E   + G+ N +AD +SR+
Sbjct:  693 LVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRI 832          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = -3
Query:   72 VLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPY--VYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGC--KIIVFTDHATLKYLLTKKD--AKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 473
            +++ P+++  ++     L  DASD AVGAVL Q+ D   Y  V Y S  ++ AQLNY  ++KEMLA++ +L+++R YL        + TDH  L   +T +      RL RW L LQ F+ E   + G+ N +AD +SR+
Sbjct:  693 LVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRI 832          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = -3
Query:   51 KIKVVL-TSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDR---IPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRLHFGIITE 485
            K+K  L  SP++ P N +  + L  DAS   +GAVL +  ++   +  V Y S +L  AQ NY   E E+L ++ AL +FR  L G    + TDH +L  L  K +   R+ RW+  L  +D   +   G +NVVAD +SR  + I  E
Sbjct:  894 KLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPE 1042          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = -3
Query:   51 KIKVVL-TSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDR---IPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRLHFGIITE 485
            K+K  L  SP++ P N +  + L  DAS   +GAVL +  ++   +  V Y S +L  AQ NY   E E+L ++ AL +FR  L G    + TDH +L  L  K +   R+ RW+  L  +D   +   G +NVVAD +SR  + I  E
Sbjct:  868 KLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPE 1016          
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = -3
Query:   72 IKVVLTSP-IIQPPNWRLPFELMCDASDYAVGAVLRQRVD--RIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 482
            +K  L +P ++Q P++   F +  DAS  A GAVL Q  +  ++P V YAS      + N  TTE+E+ A+ +A+ +FR Y+ G    V TDH  L YL +  +   +L R  L L+ ++   +  KG +N VAD +SR+
Sbjct:  597 LKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLP-VAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRI 735          
The following BLAST results are available for this feature:
BLAST of CX290573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
POL3_DROME7.526e-2342.45Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME4.130e-2140.00Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME5.964e-2040.15Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME2.593e-1535.66Retrovirus-related Pol polyprotein from transposon... [more]
RTF23_SCHPO7.544e-1537.14Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO7.544e-1537.14Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO7.544e-1537.14Retrotransposable element Tf2 155 kDa protein type... [more]
YI31B_YEAST3.744e-1435.57Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST8.341e-1435.57Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
POL4_DROME9.222e-1335.71Retrovirus-related Pol polyprotein from transposon... [more]
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Properties
Property NameValue
Genbank descriptionC02025F07SK IF1 Citrus clementina cDNA clone C02025F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290573 ID=CX290573; Name=CX290573; organism=Citrus clementina; type=EST; length=547bp
TCCACACTCATTAATTGTTCATTTGGAAATGACTCATTCAATGTTAATGG
CTCTGTAATTATGCCAAAATGGAGACGAGAGACATAGTCAGCCACAACAT
TTTCTGTGCCTTTTTTATCTTTAAATTCCAAATCGAATCTCTGCAAAAGT
AACACCCAACGAATTAGCCTAACTTTTGCATCTTTCTTTGTGAGAAGATA
TTTAAGAGTAGCATGATCTGTGAATACAATTATTTTACAACCAATGAGAT
AAGATCGAAAATTTTCTAATGCAAACACTACTGCTAGCATTTCTTTTTCA
GTAGTTAAATAGTTCAACTGTGCATCATTCAATGTCATACTAGCATAGTA
AACATAGGGAATTCGATCAACCCTTTGTCTTAATACTGCTCCTACTGCAT
AATCAGATGCATCACACATAAGCTCAAATGGTAACCTCCAGTTTGGGGGC
TGAATGATGGGTGATGTCAACACTACTTTAATTTTTCAATGCCACAAGAT
ATGAATCATCAAAGATAAAAGGTACATCCTTTAGCAGTAGATTGCAT
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