CX290573
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23 Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3 Query: 72 KIKVVLTS-PIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 485 K+K +++ PI++ P++ F L DASD A+GAVL Q + Y+ S TLN+ ++NY T EKE+LA+V+A + FR YL+G + +DH L +L KD +L RW + L FD + K KG EN VAD +SR+ Sbjct: 489 KLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYI---SRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRI 624
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.130e-21 Identity = 54/135 (40.00%), Postives = 83/135 (61.48%), Query Frame = -3 Query: 72 VVLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 476 +++ PI+Q P++ F L DAS+ A+GAVL Q I ++ S TLND +LNY EKE+LA+V+A + FR YL+G + ++ +DH L++L K+ +L RW + L + + KG EN VAD +SR+ Sbjct: 492 LIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFI---SRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRI 623
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20 Identity = 55/137 (40.15%), Postives = 83/137 (60.58%), Query Frame = -3 Query: 72 VVLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVD-RIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKII-VFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 476 ++ +S I+ P + PF L DAS++A+GAVL Q R + Y S +LN + NY T EKEMLA++++L+N R+YL G I V+TDH L + L ++ +L RW ++ ++ E K G NVVAD +SR+ Sbjct: 419 ILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRI 555
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.593e-15 Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = -3 Query: 75 IIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKII-VFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSR 458 I++ P+++ PF+L DAS +GAVL Q I + S TL + NY T E+E+LA+V+AL +++L G + I +FTDH L + + ++ ++ RW + + + + K G EN VAD +SR Sbjct: 485 ILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMI---SRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSR 610
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15 Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = -3 Query: 72 VLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPY--VYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGC--KIIVFTDHATLKYLLTKKD--AKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 473 +++ P+++ ++ L DASD AVGAVL Q+ D Y V Y S ++ AQLNY ++KEMLA++ +L+++R YL + TDH L +T + RL RW L LQ F+ E + G+ N +AD +SR+ Sbjct: 693 LVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRI 832
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15 Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = -3 Query: 72 VLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPY--VYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGC--KIIVFTDHATLKYLLTKKD--AKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 473 +++ P+++ ++ L DASD AVGAVL Q+ D Y V Y S ++ AQLNY ++KEMLA++ +L+++R YL + TDH L +T + RL RW L LQ F+ E + G+ N +AD +SR+ Sbjct: 693 LVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRI 832
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15 Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = -3 Query: 72 VLTSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDRIPY--VYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGC--KIIVFTDHATLKYLLTKKD--AKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 473 +++ P+++ ++ L DASD AVGAVL Q+ D Y V Y S ++ AQLNY ++KEMLA++ +L+++R YL + TDH L +T + RL RW L LQ F+ E + G+ N +AD +SR+ Sbjct: 693 LVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRI 832
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14 Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = -3 Query: 51 KIKVVL-TSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDR---IPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRLHFGIITE 485 K+K L SP++ P N + + L DAS +GAVL + ++ + V Y S +L AQ NY E E+L ++ AL +FR L G + TDH +L L K + R+ RW+ L +D + G +NVVAD +SR + I E Sbjct: 894 KLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPE 1042
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14 Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = -3 Query: 51 KIKVVL-TSPIIQPPNWRLPFELMCDASDYAVGAVLRQRVDR---IPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRLHFGIITE 485 K+K L SP++ P N + + L DAS +GAVL + ++ + V Y S +L AQ NY E E+L ++ AL +FR L G + TDH +L L K + R+ RW+ L +D + G +NVVAD +SR + I E Sbjct: 868 KLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPE 1016
BLAST of CX290573 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13 Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = -3 Query: 72 IKVVLTSP-IIQPPNWRLPFELMCDASDYAVGAVLRQRVD--RIPYVYYASMTLNDAQLNYLTTEKEMLAVVFALENFRSYLIGCKIIVFTDHATLKYLLTKKDAKVRLIRWVLLLQRFDLEFKDKKGTENVVADYVSRL 482 +K L +P ++Q P++ F + DAS A GAVL Q + ++P V YAS + N TTE+E+ A+ +A+ +FR Y+ G V TDH L YL + + +L R L L+ ++ + KG +N VAD +SR+ Sbjct: 597 LKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLP-VAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRI 735 The following BLAST results are available for this feature:
BLAST of CX290573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290573 ID=CX290573; Name=CX290573; organism=Citrus clementina; type=EST; length=547bpback to top |