CX290579

Overview
NameCX290579
Unique NameCX290579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX290579 vs. ExPASy Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.593e-25
Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = 2 
Query:   11 IAYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIGLPPNEFNHPELKKNVADSIPLEHITRIFPIL 247
            + YQK+PR VLAEAIN++GL+LDKFLEH  AN GW++E   + SQLI LP NEFNHPELKKN A+++P EH+TRIFP+L
Sbjct:  148 LTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIEKG-ARSQLIVLPRNEFNHPELKKNTAETVPFEHVTRIFPVL 225
[Close]
BLAST of CX290579 vs. ExPASy Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.543e-23
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 2 
Query:   11 IAYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIGLPPNEFNHPELKKNVADSIPLEHITRIFPILG 250
            ++YQK+PR+VLAEA+N+ G SLDKF+E Q  N GWI+E +  +   I LP NEFNHPELKKN  +++PLEHI RIFPILG
Sbjct:  150 LSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226
The following BLAST results are available for this feature:
BLAST of CX290579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EIF3K_ORYSJ1.593e-2567.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_ARATH2.543e-2362.50Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionC02025G01SK IF1 Citrus clementina cDNA clone C02025G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290579 ID=CX290579; Name=CX290579; organism=Citrus clementina; type=EST; length=484bp
ATGTCCTTTCATTGCATATCAAAAGATTCCAAGGACTGTGCTTGCCGAGG
CTATCAATCTTAAAGGTCTATCTCTGGACAAATTCCTTGAACACCAGAAG
GCCAATTGTGGCTGGATTCTTGAAGGAGATCAAAGTACGAGCCAATTGAT
TGGCCTGCCGCCTAATGAATTTAATCATCCCGAGCTGAAGAAGAATGTTG
CTGATAGCATCCCGTTAGAACACATTACCCGCATATTTCCCATTCTCGGT
TGATTGAAGTTCAAATCCTGGCATTTGGTAAATTTTCATTTGTTTTAACC
AGATGCTATAGCACTCTTGCAGTGAATTTTGGGGACTGCTGTAATCTCTT
TTTGTGTTTATGTTGAAAACATAGCCCAAGTGGCTTGGAGGAATTGATGA
GACACAATGTTATTATTGGCATTTATTTTCTCTTACCAATGACGCTTGTT
TGAAGAAGCTGAAAAAAAAAAAAAAAAAAAAAAA
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