CX290585

Overview
NameCX290585
Unique NameCX290585
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.846e-34
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 3
Query:  453 MYLKDIVLK-SESRNDDHGVKITCNSWLQPK---EENTPT-RIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDV 704
            M+L+DI L  S+   +   + I CNSW+QPK   +E TP+ RIFFANK+YLP  TP GL+  R+ +L+  +GDG G R+  DR+YDYDV
Sbjct:  177 MFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGEREADDRVYDYDV 265          

HSP 2 Score: 77.411 bits (189), Expect = 7.846e-34
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   82 SSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEVGAIYVENEHR 447
            SS++  +G +    +AAA   +KA+AT K T+ + +   I ++             L G+S SLELVS++LD KTG EK T  S+A  V +D      YE+ F+VP  FG +GAI V NE R
Sbjct:   65 SSATASRGDSSSDMAAAAAVRVKAVATIKVTVGELINRSIDIRD------------LIGRSLSLELVSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELR 174          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.097e-30
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  453 MYLKDIVLKS-ESRNDDHGVKITCNSWLQPK---EENTP-TRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDV 704
            M+L+D+ L + +   +   + I CNSW+QPK   +E TP  RIFFA K+YLP  TP GL+  R ++L+  +G+G G R+  DR+YDYDV
Sbjct:  195 MFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA-KAYLPGQTPAGLRSYREEDLKQKRGNGAGQREADDRVYDYDV 282          

HSP 2 Score: 75.0998 bits (183), Expect = 8.097e-30
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   82 SSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEVGAIYVENE 441
            +S + ++G      + AAV  +KA+AT K T+   + ++   K+  +++D      L G+S  LELVS++L+ KTG +K T  S+A +V +D  G   YE+ F+VP  FG +GA+ V NE
Sbjct:   77 ASEAARRGTGSSDMAPAAVVKVKAVATIKVTVEGLLNSLRPSKAIDNIRD------LIGRSLFLELVSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVVVTNE 190          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.227e-25
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  453 MYLKDIVLKSESRNDDHGVKITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYD 701
            M++KDI L +   ++   +     SW+  K ++   R FF  KSYLPS TP G++ LR++EL  L+GDG   R+  +R+YDYD
Sbjct:  160 MFIKDIKLITGG-DESTAITFDVASWVHSKFDDPEPRAFFTVKSYLPSQTPPGIEALRKKELETLRGDGHSERKFHERVYDYD 241          

HSP 2 Score: 65.0846 bits (157), Expect = 5.227e-25
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  118 AGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLK-----DEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEVGAIYVENEH 444
            A +  AV    ++ T +R L   VTA++T +  +S+      D+I +  LFGK+  LELVS++LD KTG E+      A      KEG Y  E+K +VP  FG VGA+ VENEH
Sbjct:   51 ASTEEAVGVSTSVTTKERAL--TVTAIVTAQVPTSVYVARGLDDIQD--LFGKTLLLELVSSELDPKTGRERERVKGFAHMTL--KEGTY--EAKMSVPASFGPVGAVLVENEH 156          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.499e-24
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  507 VKITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDY 698
            V   CNSW+Q   E    R+FF+NK YLPS TP GL+ LR +EL+ L+GDG GVR+LSDRIYDY
Sbjct:  196 VHFACNSWVQSTRELPTKRVFFSNKPYLPSETPPGLRELREKELKDLRGDGTGVRKLSDRIYDY 259          

HSP 2 Score: 47.3654 bits (111), Expect = 1.499e-24
Identity = 40/152 (26.32%), Postives = 66/152 (43.42%), Query Frame = 1
Query:   40 PFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESF---------LFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVG--------NDKEGNYLYESKFNVPFDFGEVGAIYVENEH 444
            P L G  HG R++  ++  ++ P   A  ++ +      A  +R   + V     +      K++I E+          + G++  LEL+STK+       +T KP  + RV           K  + +Y ++F V  DFGE GAI V N H
Sbjct:   31 PLLPGERHGRRKVVVAAISEEVPRLAASPSSGIKG--GGAGERRPAPEKVALRAALTVRRKQKEDIKEAVAGHLDALWDMVGRNVVLELISTKIH-----PRTKKPMQSGRVSIKDWCQKRGAKGDHVVYTAEFTVDADFGEPGAIAVANRH 175          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.539e-24
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  456 YLKDIVLKSESRNDDHGVKITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDV 704
            Y++ IV++       H    TCNSW+QP   +   R+FF+N+ YLPS TP GL+ LR +EL  L+GDG G R+++DR+YDYDV
Sbjct:  168 YIESIVVEGFPTGPAH---FTCNSWVQPTRVSRDRRVFFSNRPYLPSETPPGLRELRLRELADLRGDGTGERRITDRVYDYDV 247          

HSP 2 Score: 45.4394 bits (106), Expect = 2.539e-24
Identity = 33/95 (34.74%), Postives = 48/95 (50.53%), Query Frame = 1
Query:  193 AVITVKSN--SSLKDEIDESF-----LFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKE---GNYLYESKFNVPFDFGEVGAIYVENEHR 447
            AV+TV+       KD   E         G+S  LELVST+ D + G+ K +KPS  +   + K+      +Y ++F V   FGE GA+ V N H+
Sbjct:   70 AVVTVRRRRKEDAKDRFAEQLDALADRVGRSVLLELVSTETDPRKGTPKKSKPSALVGWFDKKDVKAERVVYTAEFAVDAGFGEPGAVTVLNRHQ 164          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.594e-23
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  507 VKITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDV 704
            V   CNSW+Q ++++   RIFF N+ YLP+ TP GL+ LR +EL++L+GDG GVR+LSDRIYD+DV
Sbjct:  200 VHFPCNSWVQSQKDHPDKRIFFTNQPYLPNETPSGLRVLREKELKNLRGDGSGVRKLSDRIYDFDV 265          

HSP 2 Score: 41.5874 bits (96), Expect = 4.594e-23
Identity = 33/102 (32.35%), Postives = 52/102 (50.98%), Query Frame = 1
Query:  187 VTAVITVKSNSSLKDEIDESFL---------FGKSFSLELVSTKLDHKTGSEKTTKPSHAI------RVGNDKEGNYLYESKFNVPFDFGEVGAIYVENEHR 447
            V AV+TV++ +  K+++ E+ +          G++  LEL+ST+LD KT   K  K S+A       +    K     Y ++F V   FG  GAI V N+H+
Sbjct:   86 VRAVVTVRNKN--KEDLKETLVKHLDAFADKIGRNIVLELISTQLDPKT---KLPKKSNAAVLKDWSKKSKTKAERVHYTAEFTVDAAFGSPGAITVMNKHQ 182          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.713e-22
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  507 VKITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDV 704
            V   CNSW+Q ++++   RI F N+ YLPS TP GL+ LR +EL +L+G+G+G R+LSDRIYDYDV
Sbjct:  206 VHFPCNSWVQSQKDHPSKRILFTNQPYLPSETPSGLRTLREKELENLRGNGKGERKLSDRIYDYDV 271          

HSP 2 Score: 42.3578 bits (98), Expect = 1.713e-22
Identity = 34/129 (26.36%), Postives = 60/129 (46.51%), Query Frame = 1
Query:   70 RQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHA---IRVGNDKEGNYLYESKFNVPFDFGEVGAIYVENEHR 447
            + +  S+  +K   E     +    ++A+AT +    ++    + VK   +  D+I      G++  LEL+ST++D KT   K +K +      +  N K     Y ++F V   FG  GAI V N+H+
Sbjct:   67 KTLRISTVGRKQEKEEEEEKSVKFKVRAVATVRNKNKEDFKETL-VKHLDAFTDKI------GRNVVLELMSTQVDPKTNEPKKSKAAVLKDWSKKSNSKAERVHYTAEFTVDSAFGSPGAITVTNKHQ 188          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.864e-18
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 3
Query:  495 DDHGVKITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDV 704
            ++  V   C SW+ P       R+FF   SYLPS TP G++ LR++EL  L+G G G R+  DRIYDYDV
Sbjct:  191 EESAVTFHCKSWIDPSHCTPDKRVFFPAHSYLPSQTPKGVEGLRKRELEILRGTGCGERKEHDRIYDYDV 260          

HSP 2 Score: 42.3578 bits (98), Expect = 2.864e-18
Identity = 34/117 (29.06%), Postives = 58/117 (49.57%), Query Frame = 1
Query:  121 GSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSS------LKDEIDESFLFGKSFSLELVSTKLDHKTGSEK---TTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEVGAIYVENEH 444
            G+A        +    RT    + A +TV  + +      L D I +++L      ++LVS++LD +TG E+   +    H+ RV ++ +   +YE+ F VP  FG +GA+ V N H
Sbjct:   66 GAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRDFLYDLILKTWLH-----VDLVSSELDPQTGQEREPISGAVKHSGRVDDEWD---MYEATFKVPASFGPIGAVQVTNYH 174          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.845e-18
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  453 MYLKDIVLKSESRNDDHGVKITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGR---GVRQLSDRIYDYDV 704
            ++LK + LK    +    +  TC SW+ PK  +   RIFF++KSYLPS TP+ LK+ R++EL  LQG  R   G     +RIYDYDV
Sbjct:  163 LFLKGVELKLPGGS----ITFTCESWVAPKSVDPTKRIFFSDKSYLPSQTPEPLKKYRKEELETLQGKNREEVGEFTKFERIYDYDV 245          

HSP 2 Score: 39.2762 bits (90), Expect = 4.845e-18
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 1
Query:  256 GKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEVGAIYVENEH 444
            G+S  +EL+S K D     ++ T   +A RV  +      YE +F +P DFG VGAI ++N++
Sbjct:  103 GRSLLVELISAKTD-----QRITVEDYAQRVWAEAPDEK-YECEFEMPEDFGPVGAIKIQNQY 159          
BLAST of CX290585 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.186e-18
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 3
Query:  522 NSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDV 704
            N+W+  K +N   RI F ++  LPS TPDG+K LR ++L  ++GDG+G R+  +RIYDYDV
Sbjct:  199 NTWIHSKNDNPQARIIFRSQPCLPSETPDGIKELREKDLVSVRGDGKGERKPHERIYDYDV 259          

HSP 2 Score: 41.2022 bits (95), Expect = 8.186e-18
Identity = 31/103 (30.10%), Postives = 53/103 (51.46%), Query Frame = 1
Query:  163 SKRTLIDNVTAVITVKSNSSLKDEIDESF---------LFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGND-KEGNYL-YESKFNVPFDFGEVGAIYVEN 438
            SK T    VTAV+ ++    +K+++ E F           G+   ++LVS ++D +TG  + +  S  + +    K+  YL + + F VP +FG+ GAI V N
Sbjct:   74 SKYTGSKTVTAVVKIRKK--IKEKLTERFEHQLELFMKAIGQGMLIQLVSEEIDPETGKGRKSLESPVMGLPKAVKDPRYLVFTADFTVPINFGKPGAILVTN 174          
The following BLAST results are available for this feature:
BLAST of CX290585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
LOXC1_ORYSJ7.846e-3450.56Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ8.097e-3046.07Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX23_HORVU5.227e-2540.96Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ORYSJ1.499e-2460.94Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX5_ORYSJ2.539e-2448.19Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX3_ARATH4.594e-2357.58Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH1.713e-2256.06Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU2.864e-1847.14Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ARATH4.845e-1844.83Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH8.186e-1849.18Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC02025G09SK IF1 Citrus clementina cDNA clone C02025G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290585 ID=CX290585; Name=CX290585; organism=Citrus clementina; type=EST; length=704bp
GAGGTCTACCCTATCACAGCCCTATTTTCATTCTCTAAGCCTTTTCTCCA
TGGAAATAATCATGGTTTTCGCCAAATTGAGTCAAGTTCTTCACATAAAA
AGGGACCCAACGAGCGAGCTGGTTCTGCAGCTGCCGTTAACAATATCAAA
GCTATAGCAACTTCTAAAAGAACTTTAATAGACAATGTTACGGCTGTTAT
TACTGTGAAGTCAAATTCCTCTTTGAAAGATGAGATCGACGAATCCTTCC
TATTTGGTAAAAGTTTCAGCTTGGAGCTAGTTAGTACTAAGCTTGATCAC
AAGACGGGATCAGAGAAAACAACCAAGCCTAGTCATGCAATCAGAGTAGG
CAACGATAAGGAGGGAAATTATCTATATGAATCAAAATTCAATGTTCCAT
TTGATTTTGGAGAAGTTGGTGCAATATATGTAGAAAATGAGCACCGGATT
AGATGTATTTGAAGGATATTGTACTTAAATCTGAGTCCCGAAATGATGAT
CATGGTGTGAAGATAACATGTAATTCATGGCTTCAACCAAAGGAAGAAAA
CACACCGACGAGAATTTTCTTTGCTAATAAGTCATACTTGCCATCAGCAA
CACCAGATGGATTAAAGAGGTTAAGACGTCAAGAGCTTCGACATTTGCAA
GGCGATGGACGTGGAGTACGTCAGCTCTCTGATAGAATATACGATTATGA
TGTC
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