CX290616

Overview
NameCX290616
Unique NameCX290616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10777 contig Ccv1_Contig10777:1274..1920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRC_PEA (Glutathione reductase, cytosolic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.356e-56
Identity = 108/127 (85.04%), Postives = 118/127 (92.91%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPKTNL 385
            P AVFCIPPLSVVGLSEEQA+EQ KGD+L+FTS+FNPM+NTISGRQEKTVMKLVVDA+TDKVLGASMCGP+APEI+QGIA+A+KCGATKAQFDSTVGIHPSSAEEFVTMRS TRRV      PKTNL
Sbjct:  373 PYAVFCIPPLSVVGLSEEQAVEQTKGDVLIFTSTFNPMKNTISGRQEKTVMKLVVDAQTDKVLGASMCGPDAPEIVQGIAIAIKCGATKAQFDSTVGIHPSSAEEFVTMRSETRRV-TGGVKPKTNL 498          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRC_ARATH (Glutathione reductase, cytosolic OS=Arabidopsis thaliana GN=At3g24170 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.324e-54
Identity = 103/126 (81.75%), Postives = 116/126 (92.06%), Query Frame = 2
Query:    8 CAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPKTNL 385
            CAVFCIPPL+VVGLSEE+A+EQ  GDILVFTS FNPM+NTISGRQEKT+MKL+VD ++DKV+GASMCGP+A EI+QGIA+ALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRR+ A    PKTNL
Sbjct:  375 CAVFCIPPLAVVGLSEEEAVEQATGDILVFTSGFNPMKNTISGRQEKTLMKLIVDEKSDKVIGASMCGPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRI-AHKPKPKTNL 499          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRC_ORYSJ (Glutathione reductase, cytosolic OS=Oryza sativa subsp. japonica GN=GRC2 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 6.954e-54
Identity = 104/127 (81.89%), Postives = 119/127 (93.70%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPKTNL 385
            PCAVF IPPLSVVGLSE+QA+E+ K D+LV+TSSFNPM+N+IS RQEKTVMKLVVD+ETDKVLGASMCGP+APEI+QG+AVALKCGATKA FDSTVGIHPS+AEEFVTMR++TRRV + SS PKTNL
Sbjct:  371 PCAVFSIPPLSVVGLSEQQALEEAKSDVLVYTSSFNPMKNSISKRQEKTVMKLVVDSETDKVLGASMCGPDAPEIIQGMAVALKCGATKATFDSTVGIHPSAAEEFVTMRTLTRRV-SPSSKPKTNL 496          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRP_SPIOL (Glutathione reductase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.507e-53
Identity = 106/126 (84.13%), Postives = 114/126 (90.48%), Query Frame = 2
Query:    8 CAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPKTNL 385
            CAVF IPPL+VVGLSEEQAIEQ  GDILVFTSSFNPM+NTISGRQEKT+MKLVVDAETDKVLGASMCGP+A EI+QGIA+ALK GATKAQFDSTVGIHPS+AEEFVTMR  +RRV  A   PKTNL
Sbjct:  365 CAVFSIPPLAVVGLSEEQAIEQASGDILVFTSSFNPMKNTISGRQEKTIMKLVVDAETDKVLGASMCGPDAAEIMQGIAIALKFGATKAQFDSTVGIHPSAAEEFVTMREPSRRVPGA-GKPKTNL 489          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRC_BRARP (Glutathione reductase, cytosolic OS=Brassica rapa subsp. pekinensis GN=GR1 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.237e-52
Identity = 99/126 (78.57%), Postives = 117/126 (92.86%), Query Frame = 2
Query:    8 CAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPKTNL 385
            CAVFCIPPL+VVGLSEE+A+E+  GDILVFTS FNPM+NTISGRQEK++MKL+VD +TDKV+GASMCGP+A EI+QGIA+ALKCGATKAQFDSTVGIHPSSAEEFVTMR+VTRR+ A  + P+T+L
Sbjct:  378 CAVFCIPPLAVVGLSEEEAVEKATGDILVFTSGFNPMKNTISGRQEKSLMKLIVDEKTDKVIGASMCGPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAEEFVTMRTVTRRI-AYKAKPQTSL 502          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRP_ARATH (Glutathione reductase, chloroplastic OS=Arabidopsis thaliana GN=EMB2360 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.536e-35
Identity = 72/126 (57.14%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPKTN 382
            PCAVF  PP+  VGL+EEQAIEQ  GD+ V+TS+F P++ T+SG  ++  MKL+V A T+KVLG  MCG ++PEI+QG  VA+K G TKA FD+TVG+HP++AEEFVTMR+ TR+    SS  K +
Sbjct:  432 PCAVFSQPPIGTVGLTEEQAIEQ-YGDVDVYTSNFRPLKATLSGLPDRVFMKLIVCANTNKVLGVHMCGEDSPEIIQGFGVAVKAGLTKADFDATVGVHPTAAEEFVTMRAPTRKFRKDSSEGKAS 556          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRP_TOBAC (Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 72/124 (58.06%), Postives = 95/124 (76.61%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSNPK 376
            P AVF  PP+  VGL EEQAI++  GD+ V+T++F P++ TISG  ++  MKL+V A+T KVLG  MCG +APEI+QG A+A+K G TKA FD+TVGIHP+SAEEFVTMR+ TR+V ++ S  K
Sbjct:  424 PAAVFSQPPIGQVGLMEEQAIKEF-GDVDVYTANFRPLKATISGLPDRVFMKLIVCAKTSKVLGLHMCGDDAPEIVQGFAIAVKAGLTKADFDATVGIHPTSAEEFVTMRTPTRKVRSSPSEGK 546          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRP_SOYBN (Glutathione reductase, chloroplastic OS=Glycine max GN=GR PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.326e-33
Identity = 71/122 (58.20%), Postives = 95/122 (77.87%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRVAAASSN 370
            P AVF  PP+  VGL+EEQA++Q  GDI +FT++F P++ T+SG  ++  MKLVV A+T++VLG  MCG +APEI+QG AVALK   TKA FD+TVGIHPS+AEEFVTMR+ TR++  + S+
Sbjct:  410 PSAVFSQPPIGQVGLTEEQAVQQ-YGDIDIFTANFRPLKATLSGLPDRVFMKLVVCAKTNEVLGLHMCGEDAPEIVQGFAVALKARLTKADFDATVGIHPSAAEEFVTMRTPTRKIRKSESS 530          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHRP_PEA (Glutathione reductase, chloroplastic/mitochondrial OS=Pisum sativum GN=GR PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 71/116 (61.21%), Postives = 88/116 (75.86%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTRRV 352
            P AVF  PP+  VGL+EEQA EQ  GDI VFT++F PM+ T+SG  ++  MKL+V AET+ VLG  MCG +A EI QG AV +K G TKA FD+TVGIHP++AEEFVTMR+ TR+V
Sbjct:  418 PSAVFSQPPIGGVGLTEEQAAEQ-YGDIDVFTANFRPMKATLSGLPDRVFMKLIVSAETNVVLGLHMCGEDAAEIAQGFAVGIKAGLTKADFDATVGIHPTAAEEFVTMRTPTRKV 532          
BLAST of CX290616 vs. ExPASy Swiss-Prot
Match: GSHR_PSEAE (Glutathione reductase OS=Pseudomonas aeruginosa GN=gor PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 67/114 (58.77%), Postives = 85/114 (74.56%), Query Frame = 2
Query:    5 PCAVFCIPPLSVVGLSEEQAIEQGKGDILVFTSSFNPMRNTISGRQEKTVMKLVVDAETDKVLGASMCGPEAPEILQGIAVALKCGATKAQFDSTVGIHPSSAEEFVTMRSVTR 346
            P AVF +P +  VGL+EE+A+  G   + +F S F PM+ T++  QEKT+MKLVVDA  D+VLG  M G EA EILQGIAVA+K GATK  FD T+GIHP++AEEFVT+R+ TR
Sbjct:  339 PTAVFSLPNIGTVGLTEEEALSAGH-KVKIFESRFRPMKLTLTDDQEKTLMKLVVDAHDDRVLGCHMVGAEAGEILQGIAVAMKAGATKQAFDETIGIHPTAAEEFVTLRTPTR 451          
The following BLAST results are available for this feature:
BLAST of CX290616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GSHRC_PEA4.356e-5685.04Glutathione reductase, cytosolic OS=Pisum sativum ... [more]
GSHRC_ARATH5.324e-5481.75Glutathione reductase, cytosolic OS=Arabidopsis th... [more]
GSHRC_ORYSJ6.954e-5481.89Glutathione reductase, cytosolic OS=Oryza sativa s... [more]
GSHRP_SPIOL4.507e-5384.13Glutathione reductase, chloroplastic (Fragment) OS... [more]
GSHRC_BRARP2.237e-5278.57Glutathione reductase, cytosolic OS=Brassica rapa ... [more]
GSHRP_ARATH5.536e-3557.14Glutathione reductase, chloroplastic OS=Arabidopsi... [more]
GSHRP_TOBAC7.993e-3458.06Glutathione reductase, chloroplastic (Fragment) OS... [more]
GSHRP_SOYBN2.326e-3358.20Glutathione reductase, chloroplastic OS=Glycine ma... [more]
GSHRP_PEA2.571e-3261.21Glutathione reductase, chloroplastic/mitochondrial... [more]
GSHR_PSEAE1.843e-3058.77Glutathione reductase OS=Pseudomonas aeruginosa GN... [more]

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Properties
Property NameValue
Genbank descriptionC02026B05SK IF1 Citrus clementina cDNA clone C02026B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290616 ID=CX290616; Name=CX290616; organism=Citrus clementina; type=EST; length=647bp
GAGGCCCTGTGCTGTATTTTGCATACCTCCTCTCTCTGTAGTGGGTCTCA
GTGAGGAGCAGGCCATAGAGCAAGGAAAGGGTGATATCCTTGTTTTCACA
TCAAGCTTCAATCCCATGAGGAACACTATCTCTGGACGGCAAGAGAAGAC
AGTAATGAAGCTAGTGGTGGATGCCGAGACGGATAAAGTTCTTGGAGCAT
CAATGTGTGGGCCAGAAGCACCTGAGATATTGCAGGGTATTGCTGTTGCA
CTGAAATGTGGAGCTACGAAGGCACAATTTGACAGCACGGTGGGAATACA
TCCTTCCTCTGCTGAGGAATTCGTGACCATGCGGTCTGTGACGAGACGTG
TTGCTGCCGCAAGCAGCAATCCAAAGACAAATCTGTAAGGTTCAATCAAA
TATCAGAGAGGAAGCGGGTTTGATATTTATACTATGTTGGAACATTATTT
GCTTGAATATAGGTATTTCGCATTACCAAACACAGGAAAAAAGGGGGGGA
AAATGCTGGTATAGCAGGAGTAGCCCAGTTTTGTGGTTTTTATTTTCACC
TAAATAAAAGTTTCATCTTTGAAAATATTGTACAATGGTTTTCATTCTGA
TGGTGCAAACAACAATGTAATTTTATTCCTTAAAAAAAAAAAAAAAA
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