CX290619

Overview
NameCX290619
Unique NameCX290619
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig974 contig Ccv1_Contig974:155..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_DANRE (Eukaryotic translation initiation factor 3 subunit L OS=Danio rerio GN=eif3l PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.299e-36
Identity = 77/187 (41.18%), Postives = 126/187 (67.38%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRVRLD*ADTIPDFNFSAAS 541
            YG+KM+RMQ+ D     +++ELFS+ACPKF++P  P++E    NY+++ ++ QLK+F  EV+QQ  LS +RSFLK+Y+++ +++LA ++++ E   R  L+ +KHK      T  + + DG+  S ++VDFYID +MIH+ ++K  +RYGDFF+RQI K E L   L ++ L+   +I   + S A+
Sbjct:  393 YGDKMLRMQKGD---LQVFEELFSFACPKFLSPVVPNYENVHPNYHKEPFQQQLKVFAEEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDMSEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKMPLNTGASISSSSTSRAT 576
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_XENTR (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus tropicalis GN=eif3l PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 75/170 (44.12%), Postives = 119/170 (70.00%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRV 490
            YG+KM+RMQ+ D +   IY+ELF+YACPKF++P  P+++    NY+++ Y  QLK+FL EV+QQ  LS +RSFLK+Y+++ +++LA ++++ E   R  L+ +KHK      T  + + +G+  S ++VDFYID +MIH+ ++K  +RYGDFF+RQI K E L   L ++
Sbjct:  392 YGDKMLRMQKGDAQ---IYEELFNYACPKFLSPVVPNYDNVHPNYHKEPYLQQLKVFLDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLPEQEFRIQLLVFKHKMKNLVWTSGISALEGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNKTLKKM 558
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_XENLA (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus laevis GN=eif3l PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 75/170 (44.12%), Postives = 119/170 (70.00%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRV 490
            YG+KM+RMQ+ D +   IY+ELF+YACPKF++P  P+++    NY+++ Y  QLK+FL EV+QQ  LS +RSFLK+Y+++ +++LA ++++ E   R  L+ +KHK      T  + + +G+  S ++VDFYID +MIH+ ++K  +RYGDFF+RQI K E L   L ++
Sbjct:  392 YGDKMLRMQKGDAQ---IYEELFNYACPKFLSPVVPNYDNVNPNYHKEPYLQQLKVFLDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLPEQEFRIQLLVFKHKMKNLVWTSGISALEGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNKTLKKM 558
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_MOUSE (Eukaryotic translation initiation factor 3 subunit L OS=Mus musculus GN=Eif3l PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 74/170 (43.53%), Postives = 118/170 (69.41%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRV 490
            YG+KM+RMQ+ D +   +Y+ELFSYACPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y+++ +++LA ++++ E   R  L+ +KHK      T  + + DG+  S ++VDFYID +MIH+ ++K  +RYGDFF+RQI K E L   L ++
Sbjct:  394 YGDKMLRMQKGDPQ---VYEELFSYACPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKM 560
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_CHICK (Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus GN=EIF3L PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 74/170 (43.53%), Postives = 118/170 (69.41%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRV 490
            YG+KM+RMQ+ D +   +Y+ELFSYACPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y+++ +++LA ++++ E   R  L+ +KHK      T  + + DG+  S ++VDFYID +MIH+ ++K  +RYGDFF+RQI K E L   L ++
Sbjct:  394 YGDKMLRMQKGDAQ---VYEELFSYACPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFADEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKM 560
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_NEMVE (Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.640e-35
Identity = 70/165 (42.42%), Postives = 116/165 (70.30%), Query Frame = 2 
Query:    8 EKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDL 481
            EKM ++Q+ D     +++E FSY+CPKF++P  P+F+ P  NYN++ + LQLK+F+ EV QQ ++  +RS+LK+Y+++ +++LA ++++DE T R  L+ YKHK      T   D  DG+  S+++VDFYID +MIH+ ++K  +RYG+FF+RQI K + +  +L
Sbjct:  361 EKMQKLQKGD---LQMFEECFSYSCPKFVSPVPPNFDAPPANYNREPFNLQLKVFMNEVAQQSMIPVIRSYLKLYTTMPIAKLAAFLDMDEATFRNQLLCYKHKQRNLVWTKGTDGLDGEQQSSSEVDFYIDRDMIHIADTKVDRRYGEFFMRQIYKFDEMARNL 522
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_PANTR (Eukaryotic translation initiation factor 3 subunit L OS=Pan troglodytes GN=EIF3L PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 73/170 (42.94%), Postives = 118/170 (69.41%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRV 490
            YG+KM+RMQ+ D +   +Y+ELFSY+CPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y+++ +++LA ++++ E   R  L+ +KHK      T  + + DG+  S ++VDFYID +MIH+ ++K  +RYGDFF+RQI K E L   L ++
Sbjct:  394 YGDKMLRMQKGDPQ---VYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKM 560
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_HUMAN (Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 73/170 (42.94%), Postives = 118/170 (69.41%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRV 490
            YG+KM+RMQ+ D +   +Y+ELFSY+CPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y+++ +++LA ++++ E   R  L+ +KHK      T  + + DG+  S ++VDFYID +MIH+ ++K  +RYGDFF+RQI K E L   L ++
Sbjct:  394 YGDKMLRMQKGDPQ---VYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKM 560
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_BOVIN (Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus GN=EIF3L PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 73/170 (42.94%), Postives = 118/170 (69.41%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHK------THAVDS-DGKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDLDRV 490
            YG+KM+RMQ+ D +   +Y+ELFSY+CPKF++P  P+++    NY+++ +  QLK+F  EV+QQ  LS +RSFLK+Y+++ +++LA ++++ E   R  L+ +KHK      T  + + DG+  S ++VDFYID +MIH+ ++K  +RYGDFF+RQI K E L   L ++
Sbjct:  394 YGDKMLRMQKGDPQ---VYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKM 560
[Close]
BLAST of CX290619 vs. ExPASy Swiss-Prot
Match: EIF3L_USTMA (Eukaryotic translation initiation factor 3 subunit L OS=Ustilago maydis GN=UM01228 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.934e-28
Identity = 65/173 (37.57%), Postives = 111/173 (64.16%), Query Frame = 2 
Query:    2 YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSF--EEPLVNYNQ-----DAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSSLYLSELATYMEVDEPTLRTILMTYKHKTHAVDSD------GKITSNADVDFYIDDNMIHVVESKPVKRYGDFFLRQIAKLEGLINDL 481
            YG++  +M R   E  + ++ELF YACPKFIT ++P++  EE LV Y Q     D  + QL++FL +VK Q   + VRSFL++Y++L   +LA+++E+DE  L  ++M  K+ T ++         G++ + +D+DF ID +M+H+ ES+  +RYGD+FLR   ++  ++N++
Sbjct:  416 YGDQFSKMTRPGAEGLAAFEELFIYACPKFITANSPAYHDEEALVEYKQKAVFPDPTQHQLRVFLSDVKTQLSNANVRSFLRLYTTLGTDKLASFLEIDEEELVEMMMVMKNSTRSLKWSSGSLLHGQVVNTSDLDFVIDTDMVHIAESRVGRRYGDWFLRNGTRMHDVLNNI 588
The following BLAST results are available for this feature:
BLAST of CX290619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3L_DANRE4.299e-3641.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_XENTR9.578e-3644.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_XENLA9.578e-3644.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_MOUSE2.134e-3543.53Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CHICK2.134e-3543.53Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_NEMVE3.640e-3542.42Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_PANTR4.753e-3542.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_HUMAN4.753e-3542.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_BOVIN4.753e-3542.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_USTMA1.934e-2837.57Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02026B08SK IF1 Citrus clementina cDNA clone C02026B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290619 ID=CX290619; Name=CX290619; organism=Citrus clementina; type=EST; length=690bp
ATATGGGGAGAAGATGATTCGGATGCAAAGATATGATGATGAAGCATTTT
CTATCTATGATGAGCTCTTCTCGTATGCATGTCCTAAGTTCATTACTCCC
TCTGCTCCGAGCTTTGAGGAGCCTCTTGTAAATTACAACCAGGATGCCTA
TAGACTCCAGTTGAAGCTTTTCCTTTATGAGGTGAAGCAGCAACAATTAT
TATCAGGAGTCCGATCTTTCTTGAAAGTGTATTCATCACTGTACCTTTCG
GAGCTTGCAACTTACATGGAAGTGGATGAGCCCACTCTTAGGACTATCCT
GATGACATACAAGCACAAGACTCACGCCGTTGATTCTGATGGGAAGATTA
CTTCTAATGCAGATGTGGATTTCTACATTGATGATAATATGATTCATGTA
GTTGAGTCCAAGCCGGTGAAGCGATATGGTGATTTTTTCTTGCGGCAGAT
TGCCAAGCTCGAAGGGTTGATTAATGATTTGGACAGGGTAAGGCTGGACT
GAGCTGACACCATACCGGACTTCAACTTCTCTGCTGCTTCCGGTTTCCCC
TTCCTTTTTCTATCTATTCGATAAATGACAGAGATTTTGTACTACTTAGT
TGGCATTTTCTCGTTTGAATTAGTGAGATGTCTATGTTTAGCTTTGGAAT
GTAATTCAGTTTCTACATTTTTTTTTAATTTAAAAATTAT
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