CX290655

Overview
NameCX290655
Unique NameCX290655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length562
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11229 contig Ccv1_Contig11229:662..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 6.894e-30
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEEHLT EP NE++QSCDIVAFNKI
Sbjct:  153 KLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.622e-29
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TIVDDLVS D+LIE+ LT+EP NEYIQSCDIVAFNKI
Sbjct:  153 KLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.955e-29
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  160 KLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 9.955e-29
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE+HLT+EP NEYIQS DIVAFNKI
Sbjct:  157 KLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVD L+E++LTAEP NEYIQSCDIVAFNKI
Sbjct:  155 KLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 59/72 (81.94%), Postives = 67/72 (93.06%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  160 KLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 4.941e-28
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NEYIQSCDIVAFNKI
Sbjct:  158 KLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.437e-27
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NE+IQSCDIVAFNKI
Sbjct:  155 KLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.541e-26
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE++LT EP NEY+QSCDIVAFNKI
Sbjct:  160 KLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX290655 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.785e-23
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 2
Query:   32 KLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 247
            KLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+TI+DDL S    IEE L   P NEY+QSCDIVAFNKI
Sbjct:  147 KLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216          
The following BLAST results are available for this feature:
BLAST of CX290655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
EF1B_ORYSJ6.894e-3088.89Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B2_ARATH7.622e-2987.50Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1D2_ARATH9.955e-2983.33Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1B1_ARATH9.955e-2987.50Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D_PIMBR1.300e-2884.72Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ARATH1.300e-2881.94Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D1_ORYSJ4.941e-2884.72Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ1.437e-2783.33Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU3.541e-2681.94Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT4.785e-2376.39Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC02006D01SK IF1 Citrus clementina cDNA clone C02006D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290655 ID=CX290655; Name=CX290655; organism=Citrus clementina; type=EST; length=562bp
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGCTAGAAGAGGCAGTTA
GGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCAAAATTGGTCCCA
GTCGGTTATGGGATTAAGAAGCTGCAAATCATGATTACAATCGTTGACGA
TCTTGTTTCTGTGGATTCACTGATAGAGGAACACCTCACAGCTGAGCCCT
GCAATGAGTATATTCAGAGCTGCGACATCGTCGCCTTCAATAAAATTTAA
GAATCCTCTCATTGTTTTGCCTTATAGTGCAGCCATTTTTGGCTGCAATT
TAGTTTTTGTCGTTTTAATTGTGTTCTGCTTTTTAATGGTTTTGCTTGGC
CTGCATTTTCCGTTGCTAAATTGAGAAGAAATGACGAGATGATCTTTCAA
ATTTCCTTGATATACTTCTTTATATTATCCATTGCCTCACTAATATCATA
GAAGACTCTGATGATGTATACCAAATATGGAGGGTGTGTTTTAAAATTTT
AATGCACATGAAGAATGGGATGTAATATTGTTTTGTAACGTGCCTAAAAA
AAAAAAAAAAAA
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