CX290658

Overview
NameCX290658
Unique NameCX290658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 3.404e-83
Identity = 140/179 (78.21%), Postives = 155/179 (86.59%), Query Frame = 3
Query:  132 LIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            L+  C L     +F+ SGW +A ATFYGGSDASGTMGGACGYG+LYSTGYG +TAALST LFNDGASCGQCYRIMCDY++D R+CI GTSVTITATN CPPN+ALP+D GGWCNPPRQHFDMA PAW KIG+Y GGIVPV+YQRVPC K GGVRFTINGRDYFELVL+SNV G GSI+S
Sbjct:   16 LLATCLLWNEAASFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQS 194          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.881e-82
Identity = 141/189 (74.60%), Postives = 159/189 (84.13%), Query Frame = 3
Query:  102 MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            M+K+L   A+L     L +++ AF PSG T  HATFYGGSDASGTMGGACGYG+LYS GYG  TAALSTALFNDGASCG+CYRI CD+ +D+RWC+KG SV ITATNFCPPNFALP++NGGWCNPP +HFDMA PAW+KIGIYRGGIVPV++QRV C K GGVRF INGRDYFELV I NV GAGSIKS
Sbjct:    1 MSKSLAGLAVL---AALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKS 186          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.338e-79
Identity = 131/181 (72.38%), Postives = 151/181 (83.43%), Query Frame = 3
Query:  126 AILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            AI+      +  + A  PSGW +AHATFYGG+DASGTMGGACGYGNLY+ GYG  TAALSTALFNDG +CGQCY+++CD K+D  WC  G SVTITATNFCPPN+ LPSD+GGWCNPPR HFDMA PAW+KIGIYRGGI+PV+YQRVPC K GGVRFTING DYF+LVL++NV  AGSIK+
Sbjct:   14 AIMPAAAMAAGGVGALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKA 194          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 5.086e-79
Identity = 127/176 (72.16%), Postives = 153/176 (86.93%), Query Frame = 3
Query:  141 LCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            L   S +++AF+ SGW++  ATFYGGSDASGTMGGACGYGNLY+ GYG  TAALSTALF+DGASCGQCY + CD ++D RWC  G SVT+TATNFCPPN+ALPSD+GGWCNPPR HFDMA PAW++IG+YRGGIVPV ++RVPC++ GGVRFT+ GRDYFELVL++NVA AGS++S
Sbjct:   19 LAAASTTVEAFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRS 194          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.385e-76
Identity = 126/165 (76.36%), Postives = 142/165 (86.06%), Query Frame = 3
Query:  174 SPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            +P+ W +AHATFYGG+DASGTMGGACGYGNLYS GYG   AALSTALFNDGASCGQCY+I CD K   +WC  G +VTITATNFCPPN+ LPSDNGGWCNPPR HFDMA PAW+KIG+Y  GI+PV+YQRVPC K GG+RFTING DYF+LVL++NVA AGSIKS
Sbjct:   35 APTQWQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKS 199          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.412e-75
Identity = 126/165 (76.36%), Postives = 139/165 (84.24%), Query Frame = 3
Query:  174 SPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            +P  W +AHATFYGG+DASGTMGGACGYG+LYS GYG   AALSTALFNDGASCGQCY+I CD K   +WC  G +VTITATNFCPPN+ LPSDNGGWCNPPR HFDMA PAW+KIGIYR GI+PV+YQRVPC K GGVRFTING DYF LVL++NVA  G IKS
Sbjct:   48 APPVWLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKS 212          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 9.926e-75
Identity = 125/165 (75.76%), Postives = 139/165 (84.24%), Query Frame = 3
Query:  174 SPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            +P  W +AHATFYGG+DASGTMGGACGY +LYS GYG   AALSTALFNDGASCGQCY+I CD K   +WC  G +VT+TATNFCPPN+ LPSDNGGWCNPPR HFDMA PAW+KIGIYR GI+PV+YQRVPC K GGVRFTING DYF LVL++NVA  GSIKS
Sbjct:   46 TPPVWLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKS 210          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 9.926e-75
Identity = 130/188 (69.15%), Postives = 145/188 (77.13%), Query Frame = 3
Query:  105 AKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            A  L+  AI    C    +    +P  W +AHATFYGG+DASGTMGG CGYG+LYS GYG   AALSTALFNDGASCGQCY+I CD K   +WC  G +VTITATNFCPPN+ LPSDNGGWCNPPR HFDMA PAW+KIGIY  GI+PV+YQRVPC K GGVRFTING DYF LVL++NVA  GSIKS
Sbjct:    7 AFALVFFAIAAVGCTQLTTADDAAPPVWQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKS 194          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 2.211e-74
Identity = 127/194 (65.46%), Postives = 160/194 (82.47%), Query Frame = 3
Query:   87 LFEKEMAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            +++K+   ++L   ++I     + S+ A + +GW+   ATFYGGSDASGTMGGACGYGNLY +GYG +TAALS+ALFNDGASCGQCY+I CD++++ RWC++G +VTIT TN CPPN+AL S++GGWCNPPR HFDMA PAW +IGIY+ GIVPVLYQRVPC K GGVRFT+ G +YFELVLISNVAG+GSI+S
Sbjct:    3 MWKKKKTPSILPLVVVIA----AASLIAPTTAGWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQS 192          
BLAST of CX290658 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.903e-71
Identity = 123/174 (70.69%), Postives = 147/174 (84.48%), Query Frame = 3
Query:  147 CLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 668
            C++ +  A S +      ATFYGGSDASGTMGGACGYGNLYSTGYG +TAALS+ALFNDGA+CG+CY+I CD +S+++WC  GTSVTITATN CPP+++ PS++GGWCNPPRQHFDMA PAW++IG+YRGGIVPV +QRV C + GGVRFTING  YFELVLI+NV G GSIKS
Sbjct:   17 CIAATAAALSGT------ATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCD-QSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKS 183          
The following BLAST results are available for this feature:
BLAST of CX290658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
EXPA1_ORYSJ3.404e-8378.21Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ARATH2.881e-8274.60Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP13_ORYSJ1.338e-7972.38Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ5.086e-7972.16Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ1.385e-7676.36Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ3.412e-7576.36Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ9.926e-7575.76Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ9.926e-7569.15Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ2.211e-7465.46Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ3.903e-7170.69Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC02006G07SK IF1 Citrus clementina cDNA clone C02006G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290658 ID=CX290658; Name=CX290658; organism=Citrus clementina; type=EST; length=671bp
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAATACGCCCCTCTTTCCG
AGAATCAATAGTTTTCACCAAACGTTTTATTGGCCATTGTTTGAGAAAGA
AATGGCGAAAACCTTGCTTACATCTGCAATCTTGATTCAACTCTGCTGTT
TAAGTGTCAGTATCAAAGCTTTTTCGCCTTCAGGCTGGACCCAAGCTCAT
GCCACATTCTACGGAGGCAGCGATGCCTCAGGGACAATGGGGGGAGCCTG
CGGGTATGGCAACTTGTATTCAACTGGGTATGGAATAAGCACAGCAGCAT
TGAGCACCGCATTGTTCAACGATGGAGCTTCATGTGGGCAATGCTACCGG
ATCATGTGTGACTATAAATCTGATACTAGATGGTGCATAAAAGGTACATC
TGTAACCATTACCGCTACAAACTTTTGCCCTCCTAACTTCGCTCTTCCAA
GCGACAATGGTGGCTGGTGCAATCCTCCTCGCCAGCATTTTGACATGGCT
TATCCCGCTTGGCAAAAGATTGGCATTTACAGAGGCGGGATCGTGCCCGT
TCTGTACCAAAGGGTACCGTGCAAGAAGCCTGGTGGAGTGAGATTCACTA
TTAATGGGAGGGATTATTTTGAGCTCGTATTGATTTCAAACGTGGCTGGG
GCTGGATCGATTAAATCTGCA
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