CX290696

Overview
NameCX290696
Unique NameCX290696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14840 contig Ccv1_Contig14840:428..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.372e-79
Identity = 140/229 (61.14%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDI-IMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 4.372e-79
Identity = 140/229 (61.14%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDI-IMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.709e-79
Identity = 139/229 (60.70%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDI-IMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.709e-79
Identity = 139/229 (60.70%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDI-IMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.709e-79
Identity = 139/229 (60.70%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDI-IMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.709e-79
Identity = 139/229 (60.70%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDI-IMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 293.508 bits (750), Expect = 7.457e-79
Identity = 137/229 (59.83%), Postives = 184/229 (80.35%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  + + RE+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IMQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.457e-79
Identity = 138/229 (60.26%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SF+Y  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFIYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDI-IMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 1.272e-78
Identity = 138/229 (60.26%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+ ++V+K G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDI-IMENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
[Close]
BLAST of CX290696 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.834e-78
Identity = 136/229 (59.39%), Postives = 183/229 (79.91%), Query Frame = 1 
Query:   28 SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLSNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYL 714
            SFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T R++  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+
Sbjct:  108 SFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 334
The following BLAST results are available for this feature:
BLAST of CX290696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
GDIA_PANTR4.372e-7961.14Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_HUMAN4.372e-7961.14Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIA_RAT5.709e-7960.70Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_PONPY5.709e-7960.70Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_MACFA5.709e-7960.70Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_BOVIN5.709e-7960.70Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIB_BOVIN7.457e-7959.83Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIA_CANFA7.457e-7960.26Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_MOUSE1.272e-7860.26Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIB_PONAB2.834e-7859.39Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionC02022A10SK IF1 Citrus clementina cDNA clone C02022A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290696 ID=CX290696; Name=CX290696; organism=Citrus clementina; type=EST; length=714bp
CGNNNNNNNNNNNNNNNNNNNNNNNNNAGCTTCGTCTATAATAAAGGAAA
GGTCCATAAGGTGCCAGCAACTGATATGGAAGCGCTCAAATCTCCACTCA
TGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTCATTTATGTTCAA
GATTATGATGAAAATGATCCCAAAACACACGAGGGAATGGACTTGACCAG
GGTGACCACTAGAGAGTTGATTGCGAAGTATGGTCTTGATGACAACACTA
TTGACTTCATTGGTCATGCATTGGCACTTCATAGAGATGATCGTTACTTA
AACGAACCTGCTCTTGATACAGTGAAGAGAATGAAGTTATACGCAGAGTC
TATTGCACGATTTCAAGGAGGATCACCATACATTTACCCTCTGTATGGGC
TTGGAGAGCTGCCTCAGGCCTTTGCTCGGCTTAGTGCTGTTTATGGTGGG
ACGTATATGTTGAATAAACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGG
TAAAGTAGTCGGTGTCACGTCAGAAGGGGAAACTGCAAAGTGCAAGAAAG
TTGTTTGTGATCCTTCCTATTTGTCCAACAAGGTGAGGAAGGTTGGCAGG
GTTGCTAGGGCAATCGCTATTATGAGCCACCCAATCCCAAACACCAATGA
TTCCCATTCAGTGCAGGTTATCCTTCCGCAAAAACAGTTGGGTCGTAGAT
CAGACATGTACCTC
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